Protein

MIA_06416_1

Length
429 amino acids

Browser: contig12:12782-14072+

Protein function

EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)
SGD closest match:S000007388TY4B-PTransposon Ty4-P Gag-Pol polyprotein

Protein alignments

%idAln lengthE-value
UniRef50_A0A1X7SX4635.572%4022.16e-58Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SX46_AMPQE
MCA_03512_135.152%1651.45e-22MCA_03512_1
A0A161HJI4_9ASCO28.358%2016.99e-17Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4398 PE=4 SV=1
YP41B_YEAST28.571%2033.43e-14Transposon Ty4-P Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY4B-P PE=5 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.3167
Predicted cleavage: 37

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
1 50 100 150 200 250 300 350 400 429

Detailed signature matches

  1. Domain IPR025724
    GAG-pre-integrase domain
    1. PF13976 (gag_pre-in...)
  2. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  3. Domain IPR001584
    Integrase, catalytic core
    1. PF00665 (rve)
    2. PS50994 (INTEGRASE)

Protein sequence

>MIA_06416_1
MIPEPPATSATNISYFTNLRPTSTTIRGLGSSSAKAVGDIVVDVLGQDGNPFDRVVLRDVLYVPNIPRNLFAARRAIAGG
CQFIENLDHISAVENGTTRVHAIAMGDLYFCRFRVVLPSKPVHEVFAIEPSANLWHQRLGHASVEVLKKLSKSLSVKPTH
FEVVDSHKCDACLGGKATSLPFTGTHGKSHSTVGITCVGLERTSCCYPVGHRYVLTIMDFYSRYSYVELLVKKSDASLAI
RNYIARCESYFSGDSRGNRVSYFHSDNGGEYISKDLEQFFVSKGIKHTFTVPHTPQQNGVAERLNRTLFEKAKSMLLYAH
APDYLWGEAVKCANYLRNRLPSRTTGGVCPLQLWTGKPPSYQHMRVFGCRANVVIADAKRESKLSSNIDPGVFVGYSLDR
TAYRVLVDSSIVEARDVYFDESQFPFMKR

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.