Protein
MIA_06292_1
Length
195 amino acids
Browser: contig11:14409-15061+
Protein function
| EGGNOG: | 0PR4U | LSM1 | Small nuclear ribonucleoprotein |
|---|---|---|---|
| SGD closest match: | S000003660 | LSM1 | Sm-like protein LSm1 |
| CGD closest match: | CAL0000194399 | CAALFM_CR08930CA | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_06299_1 | 64.211% | 190 | 3.33e-72 | MCA_06299_1 |
| A0A0J9XF77_GEOCN | 57.407% | 162 | 9.96e-46 | Similar to Saccharomyces cerevisiae YJL124C LSM1 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA13s00054g PE=4 SV=1 |
| UniRef50_A0A0J9XF77 | 57.407% | 162 | 2.04e-42 | Similar to Saccharomyces cerevisiae YJL124C LSM1 Lsm (Like Sm) protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XF77_GEOCN |
| A0A060T059_BLAAD | 67.778% | 90 | 2.32e-37 | ARAD1C10208p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C10208g PE=4 SV=1 |
| Q6CGS0_YARLI | 60.465% | 86 | 2.83e-33 | YALI0A16775p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A16775g PE=4 SV=1 |
| A0A1D8PTV1_CANAL | 56.250% | 96 | 5.15e-31 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR08930CA PE=4 SV=1 |
| A0A1E3PM04_9ASCO | 55.682% | 88 | 2.09e-30 | Sm-like ribonucleo protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_14488 PE=4 SV=1 |
| LSM1_YEAST | 56.757% | 74 | 3.09e-26 | Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0309
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
160
180
195
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01728
-
putative RNA bindi...
-
Sm2 motif cd01728
Protein sequence
>MIA_06292_1 MDPSSDPNNSNILPSQIFTTVAALLPAIDRRIVVVLRDGRKFFGVLRSFDQFANLVVQDTLERIYINQSTFGEIYRGVFI VRGENVVYVGELDESREELEDSLVIDSTTEEANISPFPKFSPGTLLAERQQIRLQQQHQIERNSETGQKVIRRIPYEDAI KIHSKTAALDLEAHLSQAALLPNEKFADTLDMTYY
GO term prediction
Biological Process
GO:0000956 nuclear-transcribed mRNA catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.