Protein
MCA_06299_1
Length
191 amino acids
Gene name: LSM1
Description: Sm-like protein LSm1
Browser: contigD:3796184-3796945+
RNA-seq: read pairs 1313, FPKM 84.5, percentile rank 76.2% (100% = highest expression)
Protein function
| Annotation: | LSM1 | Sm-like protein LSm1 | |
|---|---|---|---|
| KEGG: | K12620 | LSM1 | U6 snRNA-associated Sm-like protein LSm1 |
| EGGNOG: | 0PR4U | LSM1 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000003660 | LSM1 | Sm-like protein LSm1 |
| CGD closest match: | CAL0000194399 | CAALFM_CR08930CA | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_06292_1 | 64.21% | 190 | 2e-70 | MIA_06292_1 |
| A0A0J9XF77_GEOCN | 55.26% | 152 | 6e-40 | Similar to Saccharomyces cerevisiae YJL124C LSM1 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA13s00054g PE=4 SV=1 |
| UniRef50_A0A0J9XF77 | 55.26% | 152 | 1e-36 | Similar to Saccharomyces cerevisiae YJL124C LSM1 Lsm (Like Sm) protein n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XF77_GEOCN |
| A0A060T059_BLAAD | 67.71% | 96 | 1e-30 | ARAD1C10208p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C10208g PE=4 SV=1 |
| Q6CGS0_YARLI | 57.78% | 90 | 1e-22 | YALI0A16775p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A16775g PE=4 SV=1 |
| A0A1E3PM04_9ASCO | 56.67% | 90 | 1e-22 | Sm-like ribonucleo protein (Fragment) OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_14488 PE=4 SV=1 |
| A0A1D8PTV1_CANAL | 53.61% | 97 | 4e-22 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR08930CA PE=4 SV=1 |
| LSM1_YEAST | 53.01% | 83 | 1e-19 | Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM1 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0704
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
160
180
191
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01728
-
putative RNA bindi...
-
Sm2 motif cd01728
Protein sequence
>MCA_06299_1 MDPATSNILPSQVFTTAAALLPAIDRRVVVVLRDGRKLFGVLRSFDQFASIVIQDTIERIYINSSTFGEINRGVFIVRGE NVVYVGEIDEQREEQEDSCIVDSTLEEADLEPFPKIHPGMSPEERAQIQQKLRDRIERNPKTNAPIIRRIPYEEAKKIHD KLNDATKDEFIKRSKTIPNEKFTDKTELLKY
GO term prediction
Biological Process
GO:0000956 nuclear-transcribed mRNA catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.