Protein
MIA_05949_1
Length
101 amino acids
Browser: contig09:790057-790521+
Protein function
| EGGNOG: | 0PQNA | LSM2 | Small nuclear ribonucleoprotein (LSM2) |
|---|---|---|---|
| SGD closest match: | S000000122 | LSM2 | U6 snRNA-associated Sm-like protein LSm2 |
| CGD closest match: | CAL0000178800 | SNP3 | Sm-like protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_01085_1 | 87.129% | 101 | 5.38e-64 | MCA_01085_1 |
| A0A1E3PEN6_9ASCO | 78.571% | 98 | 2.09e-57 | U6 snRNA-associated Sm-like protein LSm2 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_47685 PE=4 SV=1 |
| A0A060T018_BLAAD | 73.267% | 101 | 1.08e-54 | ARAD1C04818p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C04818g PE=4 SV=1 |
| A0A0J9X4I2_GEOCN | 80.682% | 88 | 7.95e-50 | Similar to Saccharomyces cerevisiae YBL026W LSM2 Lsm (Like Sm) protein, partial (Partial) (Fragment) OS=Geotrichum candidum GN=BN980_GECA02s05229g PE=4 SV=1 |
| Q6C2F0_YARLI | 65.657% | 99 | 4.53e-48 | YALI0F08459p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F08459g PE=4 SV=1 |
| UniRef50_A0A1A0H637 | 65.263% | 95 | 1.71e-44 | U6 snRNA-associated Sm-like protein LSm2 n=32 Tax=Opisthokonta TaxID=33154 RepID=A0A1A0H637_9ASCO |
| A0A1E4TC08_9ASCO | 61.053% | 95 | 3.86e-44 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_29278 PE=4 SV=1 |
| LSM2_YEAST | 64.516% | 93 | 5.66e-43 | U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1 SV=1 |
| A0A1D8PSP7_CANAL | 62.766% | 94 | 5.50e-43 | Sm-like protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SNP3 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1433
Protein family membership
- U6 snRNA-associated Sm-like protein LSm2 (IPR016654)
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
90
101
Detailed signature matches
-
-
PIRSF016394 (Lsm2)
-
cd01725 (LSm2)
-
-
-
SSF50182 (Sm-like r...)
-
no IPR
Unintegrated signatures
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01725
-
putative RNA bindi...
-
Sm2 motif cd01725
Protein sequence
>MIA_05949_1 MIFFSVFKSLVNQEITVELKNDLSIRGTLKSVDTYLNLKLDNITTLDDGNYPHLNSVRNIFIRGSVIRYVHLPASAIDTA LLEDATRREALLQAGTPVSGH
GO term prediction
Biological Process
GO:0006397 mRNA processing
Molecular Function
None predicted.
Cellular Component
None predicted.