Protein
MCA_01085_1
Length
101 amino acids
Gene name: LSM2
Description: U6 snRNA-associated Sm-like protein LSm2
Browser: contigA:3462035-3462552-
RNA-seq: read pairs 628, FPKM 76.1, percentile rank 74.4% (100% = highest expression)
Protein function
| Annotation: | LSM2 | U6 snRNA-associated Sm-like protein LSm2 | |
|---|---|---|---|
| KEGG: | K12621 | LSM2 | U6 snRNA-associated Sm-like protein LSm2 |
| EGGNOG: | 0PQNA | LSM2 | Small nuclear ribonucleoprotein (LSM2) |
| SGD closest match: | S000000122 | LSM2 | U6 snRNA-associated Sm-like protein LSm2 |
| CGD closest match: | CAL0000178800 | SNP3 | Sm-like protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05949_1 | 87.13% | 101 | 2e-62 | MIA_05949_1 |
| A0A1E3PEN6_9ASCO | 76.53% | 98 | 6e-55 | U6 snRNA-associated Sm-like protein LSm2 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_47685 PE=4 SV=1 |
| A0A060T018_BLAAD | 75.25% | 101 | 5e-54 | ARAD1C04818p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C04818g PE=4 SV=1 |
| A0A0J9X4I2_GEOCN | 80.68% | 88 | 3e-49 | Similar to Saccharomyces cerevisiae YBL026W LSM2 Lsm (Like Sm) protein, partial (Partial) (Fragment) OS=Geotrichum candidum GN=BN980_GECA02s05229g PE=4 SV=1 |
| Q6C2F0_YARLI | 68.69% | 99 | 7e-48 | YALI0F08459p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F08459g PE=4 SV=1 |
| UniRef50_A0A1A0H637 | 65.62% | 96 | 3e-43 | U6 snRNA-associated Sm-like protein LSm2 n=32 Tax=Opisthokonta TaxID=33154 RepID=A0A1A0H637_9ASCO |
| A0A1E4TC08_9ASCO | 63.16% | 95 | 5e-44 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_29278 PE=4 SV=1 |
| LSM2_YEAST | 66.67% | 93 | 1e-42 | U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM2 PE=1 SV=1 |
| A0A1D8PSP7_CANAL | 63.83% | 94 | 5e-42 | Sm-like protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SNP3 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1703
Protein family membership
- U6 snRNA-associated Sm-like protein LSm2 (IPR016654)
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
90
101
Detailed signature matches
-
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PIRSF016394 (Lsm2)
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cd01725 (LSm2)
-
-
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SSF50182 (Sm-like r...)
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no IPR
Unintegrated signatures
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01725
-
putative RNA bindi...
-
Sm2 motif cd01725
Protein sequence
>MCA_01085_1 MIFFSVFKSLINQEITVELKNDMSIHGTLKSVDQYFNLKLDNITTLDEGNYPHLSSVRNIFIRGSVVRYVHLPAHAVDTT LLEDATRREALLQSGNPVSGH
GO term prediction
Biological Process
GO:0006397 mRNA processing
Molecular Function
None predicted.
Cellular Component
None predicted.