Protein

MIA_05523_1

Length
387 amino acids


Browser: contig08:719563-720727+

Protein function

EGGNOG:0PJUTSEN2Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. This subunit may anchor the endonuclease complex to the nuclear membrane. Probably carries the active site for 5'-splice site cleavage
SGD closest match:S000004095SEN2tRNA-splicing endonuclease subunit SEN2
CGD closest match:CAL0000185355SEN2tRNA-splicing endonuclease subunit Sen2

Protein alignments

%idAln lengthE-value
MCA_02066_147.105%3803.52e-83MCA_02066_1
A0A0J9XER8_GEOCN44.330%3882.73e-80tRNA-splicing endonuclease subunit Sen2 OS=Geotrichum candidum GN=BN980_GECA12s02430g PE=3 SV=1
UniRef50_A0A0J9XER844.330%3885.59e-77tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XER8_GEOCN
A0A167C3K9_9ASCO32.927%4107.30e-54tRNA-splicing endonuclease subunit Sen2 OS=Sugiyamaella lignohabitans GN=SEN2 PE=3 SV=1
Q5AF73_CANAL34.085%3992.94e-53tRNA-splicing endonuclease subunit Sen2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEN2 PE=3 SV=1
A0A060T1W9_BLAAD38.843%3632.79e-48tRNA-splicing endonuclease subunit Sen2 OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C19866g PE=3 SV=1
SEN2_YEAST33.586%3964.59e-45tRNA-splicing endonuclease subunit SEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEN2 PE=1 SV=1
A0A1E3PRH4_9ASCO38.767%2273.89e-43tRNA-splicing endonuclease subunit Sen2 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81026 PE=3 SV=1
Q6CFG1_YARLI33.237%3461.75e-39tRNA-splicing endonuclease subunit Sen2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B07293g PE=3 SV=1
A0A1E4TA26_9ASCO42.975%1218.80e-25Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_19218 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1203

Protein family membership

Domains and repeats

1 50 100 150 200 250 300 350 387

Detailed signature matches

    1. PIRSF011789 (tRNA_e...)
    1. PF01974 (tRNA_int_endo)
    2. SSF53032 (tRNA-intr...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. mobidb-lite (disord...)

Protein sequence

>MIA_05523_1
MSTKTPNKEPGQNPQNKKRVSKFSQYDRPLPYLDVAALPPLVPYNPFSWLNYAVEYFFPCPPPVPARRLEARIERAGRVV
VVRVDNVSDQTRLWRQGFFGKGVYSRSDPAWFARTARRLDLAEAAELALTAEERTTLRRLERARFKEERARLENERLDRV
RRREMGEDVELLPADVKVDRSLFTNTRESQNREFIDKRPEDELLLDKNGKLVSVEYVQLMPYEAIFLSEFLHVLDVRLGD
SNGQSSEPLHGWDLVHALLPAGESVAVLMAHYAAYHSFRAKGWCARSGVKFASDFVLYRRGPPFTHADFTVLVHPVVPEE
SQGDHRWYDATRTGRVVGGVKKTMIYCYVEVPPKDAFDGSLTLRQVLERCRVTTVSHIRWRPMKCRD

GO term prediction

Biological Process

GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation

Molecular Function

GO:0000213 tRNA-intron endonuclease activity

Cellular Component

GO:0000214 tRNA-intron endonuclease complex