Protein
MIA_05242_1
Length
459 amino acids
Browser: contig07:1111855-1113235-
Protein function
| EGGNOG: | 0PITZ | RPA49 | RNA Polymerase I |
|---|---|---|---|
| SGD closest match: | S000005192 | RPA49 | DNA-directed RNA polymerase I subunit RPA49 |
| CGD closest match: | CAL0000186371 | orf19.2017 | DNA-directed RNA polymerase I subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_04799_1 | 48.198% | 444 | 7.47e-122 | MCA_04799_1 |
| UniRef50_A3LMU0 | 39.855% | 414 | 1.27e-75 | RNA polymerase I alpha subunit n=29 Tax=Saccharomycetales TaxID=4892 RepID=A3LMU0_PICST |
| A0A1E3PIK2_9ASCO | 39.663% | 416 | 9.32e-74 | RNA polymerase I associated factor, A49-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46923 PE=4 SV=1 |
| A0A060T7S5_BLAAD | 40.049% | 412 | 4.39e-69 | ARAD1B22308p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B22308g PE=4 SV=1 |
| Q5AD50_CANAL | 38.747% | 431 | 1.17e-66 | DNA-directed RNA polymerase I subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2017 PE=4 SV=1 |
| RPA49_YEAST | 37.972% | 424 | 6.10e-65 | DNA-directed RNA polymerase I subunit RPA49 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPA49 PE=1 SV=2 |
| A0A0J9XI06_GEOCN | 36.636% | 434 | 2.78e-63 | Similar to Saccharomyces cerevisiae YNL248C RPA49 RNA polymerase I subunit A49 OS=Geotrichum candidum GN=BN980_GECA15s03266g PE=4 SV=1 |
| A0A167CST9_9ASCO | 32.381% | 420 | 9.11e-61 | DNA-directed RNA polymerase I subunit RPA49 OS=Sugiyamaella lignohabitans GN=RPA49 PE=4 SV=1 |
| A0A1E4TMF4_9ASCO | 29.782% | 413 | 2.61e-37 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_1545 PE=4 SV=1 |
| Q6C6Y7_YARLI | 32.459% | 305 | 1.62e-30 | YALI0E05225p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E05225g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0202
Protein family membership
- RNA polymerase I associated factor, A49-like (IPR009668)
Domains and repeats
None predicted.
Detailed signature matches
-
-
PF06870 (RNA_pol_I_A49)
-
no IPR
Unintegrated signatures
-
mobidb-lite (disord...)
Protein sequence
>MIA_05242_1 MPEQIKDKKRKRTDDLLPEITTVPISASHLDTVGPHSVEVNTLAIGAFGSVTLPESLHLDVYREKKPDGSNERILLHGET AAMDYEGVASVVQTGKKSGSSRKEADATSSSSSTPSQYFVAVYDPSTKSAELYRAPYFDVNPVVRVKRVYKGPKVKSASA ETTNTEQRTTLGHAFGTRKAQKLLRSRELNQIDSSVLSDIREDIVDSVKSSTDTLPTQEQVKETNEKERLIPPCFENATT PSEIYPIESIIPPKEWQQLHVDDILAATEQEARAALLPFQTEYATSRLARHQELDATDSSDVNFVKTVYYLSFLLGVYKN RRAKKKVALAEKLQFPPDALVGGALARFSSSYNPKSRDGRFVMDGGSELRLIAYIAALALRIDGYMLEVLPLANELNVKP SKLQEILTAMGCGIKAATSAQAEALKLSKGVAANYKMATLTVPFKLPDGIKRRGGPSRR
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
GO:0005634 nucleus