Protein
MCA_04799_1
Length
501 amino acids
Gene name: RPA49
Description: DNA-directed RNA polymerase I subunit RPA49
Browser: contigC:4089749-4091255-
RNA-seq: read pairs 1450, FPKM 35.7, percentile rank 57.5% (100% = highest expression)
Protein function
| Annotation: | RPA49 | DNA-directed RNA polymerase I subunit RPA49 | |
|---|---|---|---|
| KEGG: | K03005 | RPA49 | DNA-directed RNA polymerase I subunit RPA49 |
| EGGNOG: | 0PITZ | RPA49 | RNA Polymerase I |
| SGD closest match: | S000005192 | RPA49 | DNA-directed RNA polymerase I subunit RPA49 |
| CGD closest match: | CAL0000186371 | orf19.2017 | DNA-directed RNA polymerase I subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_05242_1 | 46.85% | 444 | 4e-129 | MIA_05242_1 |
| UniRef50_Q752D8 | 37.36% | 439 | 5e-66 | AFR638Cp n=5 Tax=Saccharomycetaceae TaxID=4893 RepID=Q752D8_ASHGO |
| RPA49_YEAST | 36.04% | 444 | 1e-66 | DNA-directed RNA polymerase I subunit RPA49 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPA49 PE=1 SV=2 |
| A0A1E3PIK2_9ASCO | 35.68% | 426 | 7e-64 | RNA polymerase I associated factor, A49-like protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_46923 PE=4 SV=1 |
| A0A060T7S5_BLAAD | 34.49% | 432 | 5e-60 | ARAD1B22308p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B22308g PE=4 SV=1 |
| A0A0J9XI06_GEOCN | 32.79% | 427 | 8e-58 | Similar to Saccharomyces cerevisiae YNL248C RPA49 RNA polymerase I subunit A49 OS=Geotrichum candidum GN=BN980_GECA15s03266g PE=4 SV=1 |
| Q5AD50_CANAL | 33.41% | 434 | 2e-54 | DNA-directed RNA polymerase I subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2017 PE=4 SV=1 |
| A0A167CST9_9ASCO | 32.79% | 433 | 7e-50 | DNA-directed RNA polymerase I subunit RPA49 OS=Sugiyamaella lignohabitans GN=RPA49 PE=4 SV=1 |
| Q6C6Y7_YARLI | 32.29% | 350 | 5e-39 | YALI0E05225p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E05225g PE=4 SV=1 |
| A0A1E4TMF4_9ASCO | 25.69% | 432 | 2e-35 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_1545 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0153
Protein family membership
- RNA polymerase I associated factor, A49-like (IPR009668)
Domains and repeats
None predicted.
Detailed signature matches
-
-
PF06870 (RNA_pol_I_A49)
-
no IPR
Unintegrated signatures
-
CYTOPLASMIC_D... (C...)
-
NON_CYTOPLASM... (N...)
-
TRANSMEMBRANE (Tran...)
-
mobidb-lite (disord...)
Protein sequence
>MCA_04799_1 MLKNSETFHIPNHFGSIVQFTTFNIDSPHSSKMTSENIEKKRKRKSTISSSSDSIPIKSHHLETPGSSSSKPALALGSFG SVTIPSELSFELYRQKQPDGAPEGILLHGEVDDIDFDGSTAVMSKKHKKNRKSGDMQSLLQADDFKLPDTVVPTSQYYVA MYDKAKNSIDLYKAPLVNVQPVAKAARIFTKKAIASLERNSNYLQMRSDLGNTFGTRKAKKMLESQQLNAIDSSVLDDIK AEIVGNIEETTKSLPTQEEMDAEREKDRITPVFVESAETPEDIYPIESILSQKEWDIIRADVILKEESPEERAKLFPYTS PYILSRITRRTNMSNSKSSASADASYFKLLYYLSFLLGVYHNRRSKKKSALQKNLNFPPEALLDSALKRYATIWNPKSRD GNFRLDAGGELKLTSFIAALALRVDGFILEVSPLANELQIKPSKLNEVLYALGCNIKPATVTQAAELKLNKSTALNYKIA TLTVPFKAPSLKKRNGPPGRR
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
Cellular Component
GO:0005634 nucleus