Protein
MIA_05164_1
Length
121 amino acids
Browser: contig07:894088-894531+
Protein function
| EGGNOG: | 0PQZG | RPB11 | dna-directed rna polymerase ii |
|---|---|---|---|
| SGD closest match: | S000005365 | RPB11 | DNA-directed RNA polymerase II subunit RPB11 |
| CGD closest match: | CAL0000175701 | RPB11 | DNA-directed RNA polymerase II core subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_05800_1 | 85.124% | 121 | 3.43e-76 | MCA_05800_1 |
| A0A0J9XH75_GEOCN | 75.207% | 121 | 3.48e-71 | Similar to Saccharomyces cerevisiae YOL005C RPB11 RNA polymerase II subunit B12.5 OS=Geotrichum candidum GN=BN980_GECA17s01781g PE=4 SV=1 |
| UniRef50_A0A0J9XH75 | 75.207% | 121 | 7.12e-68 | Similar to Saccharomyces cerevisiae YOL005C RPB11 RNA polymerase II subunit B12.5 n=19 Tax=saccharomyceta TaxID=716545 RepID=A0A0J9XH75_GEOCN |
| A0A1E3PSA2_9ASCO | 70.248% | 121 | 1.02e-65 | RBP11-like subunits of RNA polymerase OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81304 PE=4 SV=1 |
| A0A060TAJ7_BLAAD | 71.795% | 117 | 5.70e-63 | ARAD1B06996p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B06996g PE=4 SV=1 |
| A0A1D8PCD0_CANAL | 65.833% | 120 | 2.25e-60 | DNA-directed RNA polymerase II core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPB11 PE=4 SV=1 |
| Q6C7Q3_YARLI | 68.103% | 116 | 3.80e-59 | YALI0D26301p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D26301g PE=4 SV=1 |
| RPB11_YEAST | 60.169% | 118 | 4.26e-54 | DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1 SV=1 |
| A0A1E4TGM3_9ASCO | 57.500% | 120 | 6.57e-48 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2640 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2493
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
121
Detailed signature matches
-
-
PS01154 (RNA_POL_L_...)
-
no IPR
Unintegrated signatures
-
-
cd06926 (RNAP_II_RPB11)
Residue annotation
-
RPB11 - RPB3 heter...
-
RPB11 - RPB1 inter...
-
RPB11 - RPB2 inter...
-
RPB11 - RPB8 inter...
Protein sequence
>MIA_05164_1 MNAPDRFELFILPEGVSKIEISPDPRMPNAAIIKFEREDHTLGNLLRSQLLQDSRVLFAAYKVPHPLFPNFLMRIQTEEG YSPKEALKNACQAVIHQLGLLSKRFKEEWDLKAMIGESEEI
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0046983 protein dimerization activity
Cellular Component
None predicted.