Protein

MCA_05800_1

Length
121 amino acids

Gene name: RPB11

Description: DNA-directed RNA polymerase II subunit RPB11

Browser: contigD:2372925-2373393+

RNA-seq: read pairs 673, FPKM 68.2, percentile rank 72.0% (100% = highest expression)

Protein function

Annotation:RPB11DNA-directed RNA polymerase II subunit RPB11
KEGG:K03008RPB11 DNA-directed RNA polymerase II subunit RPB11
EGGNOG:0PQZGRPB11dna-directed rna polymerase ii
SGD closest match:S000005365RPB11DNA-directed RNA polymerase II subunit RPB11
CGD closest match:CAL0000175701RPB11DNA-directed RNA polymerase II core subunit

Protein alignments

%idAln lengthE-value
MIA_05164_185.12%1211e-74MIA_05164_1
A0A0J9XH75_GEOCN71.90%1215e-66Similar to Saccharomyces cerevisiae YOL005C RPB11 RNA polymerase II subunit B12.5 OS=Geotrichum candidum GN=BN980_GECA17s01781g PE=4 SV=1
UniRef50_A0A0J9XH7571.90%1211e-62Similar to Saccharomyces cerevisiae YOL005C RPB11 RNA polymerase II subunit B12.5 n=19 Tax=saccharomyceta TaxID=716545 RepID=A0A0J9XH75_GEOCN
A0A1E3PSA2_9ASCO71.07%1212e-63RBP11-like subunits of RNA polymerase OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_81304 PE=4 SV=1
A0A060TAJ7_BLAAD70.09%1173e-61ARAD1B06996p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B06996g PE=4 SV=1
Q6C7Q3_YARLI70.43%1156e-60YALI0D26301p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D26301g PE=4 SV=1
A0A1D8PCD0_CANAL65.83%1201e-57DNA-directed RNA polymerase II core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPB11 PE=4 SV=1
RPB11_YEAST62.39%1176e-54DNA-directed RNA polymerase II subunit RPB11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB11 PE=1 SV=1
A0A1E4TGM3_9ASCO58.33%1207e-47Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2640 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1746

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 20 40 60 80 100 121

Detailed signature matches

  1. Domain IPR009025
    DNA-directed RNA polymerase, RBP11-like dimerisation domain
    1. SSF55257 (RBP11-lik...)
    2. PF13656 (RNA_pol_L_2)
  2. SITE IPR008193
    DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site
    1. PS01154 (RNA_POL_L_...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.30.13...
  2. cd06926 (RNAP_II_RPB11)

Residue annotation

  1. RPB11 - RPB3 heter...
  2. RPB11 - RPB1 inter...
  3. RPB11 - RPB2 inter...
  4. RPB11 - RPB8 inter...

Protein sequence

>MCA_05800_1
MNAPDRFELFILPEGVPKIEISPDPRMPNAAIIKFEREDHTLGNLLRGQLLQDSRVLFAAYKVPHPLFPNFLMRIQTEEG
YTPKEALRNACNAVIKQLGTLSKNFQEEWRLKSILADTDDI

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0046983 protein dimerization activity

Cellular Component

None predicted.