Protein

MIA_05036_1

Length
70 amino acids

Browser: contig07:522122-522499+

Protein function

EGGNOG:0PRZ2RPB10DNA-directed RNA
SGD closest match:S000005736RPB10DNA-directed RNA polymerases I, II, and III subunit RPABC5
CGD closest match:CAL0000183011orf19.2687.1DNA-directed RNA polymerase core subunit

Protein alignments

%idAln lengthE-value
MCA_05906_187.143%701.56e-40MCA_05906_1
B5FVB1_YARLI81.159%691.73e-36YALI0B04851p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B04851g PE=3 SV=1
UniRef50_B5FVB181.159%694.00e-33YALI0B04851p n=8 Tax=Opisthokonta TaxID=33154 RepID=B5FVB1_YARLI
A0A0J9X8L9_GEOCN84.286%701.27e-36Similar to Saccharomyces cerevisiae YOR210W RPB10 RNA polymerase subunit ABC10-beta OS=Geotrichum candidum GN=BN980_GECA05s07028g PE=3 SV=1
A0A1D8PLR5_CANAL80.000%702.58e-34DNA-directed RNA polymerase core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2687.1 PE=3 SV=1
A0A1E3PFW5_9ASCO75.362%694.40e-34DNA-directed RNA polymerases II subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_27121 PE=3 SV=1
RPAB5_YEAST74.286%708.10e-31DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB10 PE=1 SV=2
A0A060T142_BLAAD45.714%701.08e-11ARAD1C17490p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C17490g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0315
Predicted cleavage: 16

Protein family membership

Domains and repeats

  1. Domain
1 10 20 30 40 50 60 70 70

Detailed signature matches

  1. Family IPR000268
    DNA-directed RNA polymerase, subunit N/Rpb10
    1. PD006539
    2. PF01194 (RNA_pol_N)
    3. PIRSF005653 (RpoN_R...)
  2. Domain IPR023580
    RNA polymerase subunit RPB10
    1. SSF46924 (RNA polym...)
  3. SITE IPR020789
    RNA polymerases, subunit N, zinc binding site
    1. PS01112 (RNA_POL_N_8KD)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.10.60

Protein sequence

>MIA_05036_1
MIIPVRCFSCGKCKVVGDKWETYLQYLEDGKTECQALDKLKLKRYCCRRMVLTHVDLIEKFLRYNSLDKN

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding

Cellular Component

None predicted.