Protein

MCA_05906_1

Length
68 amino acids

Gene name: RPB10

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC5

Browser: contigD:2728098-2728526-

RNA-seq: read pairs 787, FPKM 140.9, percentile rank 84.2% (100% = highest expression)

Protein function

Annotation:RPB10DNA-directed RNA polymerases I, II, and III subunit RPABC5
KEGG:K03007RPB10 DNA-directed RNA polymerases I, II, and III subunit RPABC5
EGGNOG:0PRZ2RPB10DNA-directed RNA
SGD closest match:S000005736RPB10DNA-directed RNA polymerases I, II, and III subunit RPABC5
CGD closest match:CAL0000183011orf19.2687.1DNA-directed RNA polymerase core subunit

Protein alignments

%idAln lengthE-value
UniRef50_A3GGI888.24%682e-36DNA-directed RNA Polymerase II subunit L n=96 Tax=Eukaryota TaxID=2759 RepID=A3GGI8_PICST
MIA_05036_187.14%703e-39MIA_05036_1
B5FVB1_YARLI86.57%671e-38YALI0B04851p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B04851g PE=3 SV=1
A0A1E3PFW5_9ASCO85.07%676e-39DNA-directed RNA polymerases II subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_27121 PE=3 SV=1
A0A1D8PLR5_CANAL83.82%682e-38DNA-directed RNA polymerase core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2687.1 PE=3 SV=1
A0A0J9X8L9_GEOCN89.71%683e-38Similar to Saccharomyces cerevisiae YOR210W RPB10 RNA polymerase subunit ABC10-beta OS=Geotrichum candidum GN=BN980_GECA05s07028g PE=3 SV=1
RPAB5_YEAST80.88%681e-34DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB10 PE=1 SV=2
A0A060T142_BLAAD47.67%861e-14ARAD1C17490p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C17490g PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0571
Predicted cleavage: 16

Protein family membership

Domains and repeats

  1. Domain
1 10 20 30 40 50 60 68

Detailed signature matches

  1. Family IPR000268
    DNA-directed RNA polymerase, subunit N/Rpb10
    1. PD006539
    2. PF01194 (RNA_pol_N)
    3. PIRSF005653 (RpoN_R...)
    4. MF_00250 (RNApol_ar...)
  2. Domain IPR023580
    RNA polymerase subunit RPB10
    1. SSF46924 (RNA polym...)
  3. SITE IPR020789
    RNA polymerases, subunit N, zinc binding site
    1. PS01112 (RNA_POL_N_8KD)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:1.10.10.60

Protein sequence

>MCA_05906_1
MIIPVRCFSCGKVVGDKWETYLQYLEEGSTEGEALDKLKLKRYCCRRMILTHVDLIEKFLRYNPLEKN

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding

Cellular Component

None predicted.