Protein

MIA_04540_1

Length
901 amino acids

Browser: contig06:298679-301385-

Protein function

EGGNOG:0PGIQPGUG_01548TRNA ligase
SGD closest match:S000003623TRL1tRNA ligase
CGD closest match:CAL0000175809LIG1tRNA ligase

Protein alignments

%idAln lengthE-value
MCA_02876_152.22%9230.0MCA_02876_1
A0A0J9X6B3_GEOCN46.22%9000.0tRNA ligase OS=Geotrichum candidum GN=BN980_GECA03s07006g PE=3 SV=1
UniRef50_A0A0J9X6B346.22%9000.0tRNA ligase n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X6B3_GEOCN
A0A167F4M2_9ASCO40.78%8730.0tRNA ligase OS=Sugiyamaella lignohabitans GN=TRL1 PE=3 SV=1
A0A1E3PGS9_9ASCO37.73%9330.0tRNA ligase OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_26810 PE=3 SV=1
A0A060SWM7_BLAAD46.75%6160.0tRNA ligase OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A06358g PE=3 SV=1
TRNL_YEAST42.92%6362e-166tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRL1 PE=1 SV=1
Q6C923_YARLI40.96%6694e-158tRNA ligase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D14916g PE=3 SV=1
TRNL_CANAL41.52%6072e-142tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LIG1 PE=3 SV=2
A0A1E4TDQ7_9ASCO39.51%5675e-126Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_17595 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0405

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 901

Detailed signature matches

  1. Domain IPR019039
    RNA ligase T4 Rnl1, N-terminal
    1. PF09511 (RNA_lig_T4_1)
  2. Domain IPR015966
    tRNA ligase, kinase, fungi
    1. PF08303 (tRNA_lig_k...)
  3. Domain IPR015965
    tRNA ligase, phosphodiesterase, fungi
    1. PF08302 (tRNA_lig_CPD)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.40.50...
  2. mobidb-lite (disord...)

Protein sequence

>MIA_04540_1
MPSKVHIFELPFDVIAPTDIGRPQSQLFSDLYKAAAQDSKRGKARRREFPLWTNPSISIAGWKFNEWDYDNEKITLPSYA
RGLFSITDPQPPHAESIVVRGYNKFFNLNELSYLNWTWINSSTKGPYEVTSKENGCIVFISGLADGTLIVTSKQSTGPRE
DSPEEKNHSFVAQQWVRKHLASKNINEADFAILLHQLNATAVGELCDDAFEEHVLAYPPQNAGIYLHGLNLNVDKFTTYP
FSAVESFAKQFGFIPTPYLTIDTASELKTFLETCAETGSWNNKEVEGFVIRTKAQLDKLHPDVYSDYFFKYKFEEPYLMY
RQWREVTRAYLAGKYRTDIRINKNVYYTNKYLDFVIPLLSNDEALRTSYINNHSIIKVRKMFLDSIGMTGSDMVHEEEEM
SHDSEAPLKPKYILVPVSTIGCGKTTVAVALRKLFPTWSHVQNDDIVKKPKPTHFAHMCMEAVRYSSNVVIADRNNHQRR
ERAQIFTDMNKFINPGTRNVYICLNFRGNYSQNSESKDVWDLTTKRVFNRGDNHQSISAASDDRKKVTMIMKGFLNRFQP
VEPSAEPDSNFDLIINLTSTGTNSSRTNLETIVKALHKNYPDLVPELPTTEQLDDAFKSSLEYVPKKCGIFGQATNDNQK
KKSDKKKKKPRYFAINIVPPSTSATTTTSAVPKSLEIAMSNLALDKTNTSNPATSVCQNMINLINKLFEANPDADQTVWK
LLQEKKRIQSEFHVTLVHRIQGGPGSTDTLAKNYFETLSSVLDTAGEKEKDEKSAPDSGKPSTDADGFTLVPKKAKSQSF
AQLGSLTANIVLKNLYWTPELMGIEVEIVSPNTDTENNDQNDTPRIYTLNTHAHITIGTSSSSVAAVEAGRALNSSPENL
VKLPWNIEPRELTGQAVAVYF

GO term prediction

Biological Process

GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation

Molecular Function

GO:0003972 RNA ligase (ATP) activity
GO:0005524 ATP binding

Cellular Component

None predicted.