Protein

MIA_04478_1

Length
821 amino acids

Browser: contig06:140747-143401+

Protein function

EGGNOG:0QE1PmRNA cleavage factor complex component Pcf11
SGD closest match:S000002636PCF11Protein PCF11
CGD closest match:CAL0000175209orf19.684Uncharacterized protein (Fragment)

Protein alignments

%idAln lengthE-value
MCA_03595_150.52%2911e-82MCA_03595_1
A0A0J9X4A6_GEOCN46.76%2934e-69Similar to Saccharomyces cerevisiae YDR228C PCF11 mRNA 3' end processing factor, essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing OS=Geotrichum candidum GN=BN980_GECA02s04883g PE=4 SV=1
UniRef50_A0A0J9X4A646.76%2937e-66Similar to Saccharomyces cerevisiae YDR228C PCF11 mRNA 3' end processing factor, essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4A6_GEOCN
A0A1E3PQA0_9ASCO45.38%2601e-57Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82046 PE=4 SV=1
A0A060SXX7_BLAAD42.64%2586e-55ARAD1A12518p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A12518g PE=4 SV=1
Q6CBY3_YARLI39.92%2531e-47YALI0C14476p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C14476g PE=4 SV=2
PCF11_YEAST35.86%2512e-38Protein PCF11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCF11 PE=1 SV=2
A0A1E4TEW2_9ASCO49.62%1339e-36Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_25963 PE=4 SV=1
A0A1D8PPQ9_CANAL34.94%2491e-31Uncharacterized protein (Fragment) OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.684 PE=4 SV=1
A0A167CDR9_9ASCO53.41%889e-24Pcf11p OS=Sugiyamaella lignohabitans GN=PCF11 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0079

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 821

Detailed signature matches

  1. Domain IPR008942
    ENTH/VHS
    1. SSF48464 (ENTH/VHS ...)
    2. G3DSA:1.25.40.90
  2. Domain IPR006569
    CID domain
    1. SM00582 (558neu5)
    2. PS51391 (CID)
  3. Domain IPR015943
    WD40/YVTN repeat-like-containing domain
    1. G3DSA:2.130.1...
Unintegrated signatures no IPR
Unintegrated signatures
  1. CYTOPLASMIC_D... (C...)
  2. Coil
  3. G3DSA:1.20.58.70
  4. NON_CYTOPLASM... (N...)
  5. TRANSMEMBRANE (Tran...)
  6. cd03562 (CID)
  7. mobidb-lite (disord...)

Residue annotation

  1. CTD binding residu...

Protein sequence

>MIA_04478_1
MSQEEIEAIRQDYLTSLQDLTSNSRPIISTLTIIAQENIHAAKAITKTIEEHISKCSPQNKLYGLYLLDSICKNVGKPYT
IYFGLNLYMVFCDAYTLVNDSIRRKMYELFLTWKQPTANGTLLFDSVPMNKLEAFLNKAQGIKPHLPAMPQQQQQQQQLQ
QQQMPTGSDKSREMYRQMKAFSADIPMSQKDLLQHIESLLHLAEQRRTTDPSDENTPMQINILNQLKDQLVNKVFQADVL
GMIQKQLASYTSEELDRFKREASLQQVASPKSIPTGPASVPSSQQQQQQISSPQQQTPANRKNKRQKVKNSPQSQNQQLN
LTPEQLQQLQQIVSMSSQQQPQPQYNMMQQAVYPNAANTLMNNNAYMMNGIYNQQPQPQQQQQPAPNYDLLSALQGIANI
QAAAAAAAAVANAVAVAPIPPKPYVTQPYGAQTGRAGLRGNHAARMYSTPIPTGPAGQTGTLPYGMGASPGMVGNGGVGT
GGAGTGGGAGSNGSVNGTGKKSGDLSALLQTVELTEESLSKPRGELIGLLYSSMPKRCSTCGKRFPDTVEGRKVREAHSD
WHFRVNKKLRDENWTQVRSWFLTEEEWIKYRDESETQIALIVPVAATVAGSVVGALNGTGGRTRRGGRGRGKNKIRGEGG
EFANASVGGSTATGTGAPDVPSLAKLTSAQLQAKYVLVPGDKSVAAQGCGICREKFKTSFNADAEDWVWRNAVHVLGRYF
HATCFAEAERGGGNDFLKRIGEGASSSSSSGQALKHDSASTAVSSAPNLPPIPTSVAVAASVTAPGSSVPETVSAPTFEL
PEGIDLTEILASVKRKHEETQ

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.