Protein

MCA_03595_1

Length
896 amino acids

Browser: contigC:460430-463180-

RNA-seq: read pairs 1231, FPKM 17.0, percentile rank 36.9% (100% = highest expression)

Protein function

EGGNOG:0QE1PmRNA cleavage factor complex component Pcf11
SGD closest match:S000002636PCF11Protein PCF11
CGD closest match:CAL0000175209orf19.684Uncharacterized protein (Fragment)

Protein alignments

%idAln lengthE-value
MIA_04478_142.28%4472e-86MIA_04478_1
A0A0J9X4A6_GEOCN44.41%3671e-77Similar to Saccharomyces cerevisiae YDR228C PCF11 mRNA 3' end processing factor, essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing OS=Geotrichum candidum GN=BN980_GECA02s04883g PE=4 SV=1
UniRef50_A0A0J9X4A644.41%3673e-74Similar to Saccharomyces cerevisiae YDR228C PCF11 mRNA 3' end processing factor, essential component of cleavage and polyadenylation factor IA (CF IA), involved in pre-mRNA 3' end processing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4A6_GEOCN
A0A060SXX7_BLAAD46.77%2632e-63ARAD1A12518p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A12518g PE=4 SV=1
A0A1E3PQA0_9ASCO44.96%2581e-60Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82046 PE=4 SV=1
Q6CBY3_YARLI40.07%2824e-55YALI0C14476p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C14476g PE=4 SV=2
PCF11_YEAST37.14%2454e-38Protein PCF11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCF11 PE=1 SV=2
A0A1D8PPQ9_CANAL37.14%2451e-35Uncharacterized protein (Fragment) OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.684 PE=4 SV=1
A0A1E4TEW2_9ASCO46.15%1302e-32Uncharacterized protein (Fragment) OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_25963 PE=4 SV=1
A0A167CDR9_9ASCO60.00%703e-23Pcf11p OS=Sugiyamaella lignohabitans GN=PCF11 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0893

Protein family membership

Domains and repeats

  1. Domain
1 100 200 300 400 500 600 700 800 896

Detailed signature matches

  1. Family IPR021605
    Subunit of cleavage factor IA Pcf11
    1. PF11526 (CFIA_Pcf11)
  2. Domain IPR008942
    ENTH/VHS
    1. SSF48464 (ENTH/VHS ...)
    2. G3DSA:1.25.40.90
  3. Domain IPR006569
    CID domain
    1. SM00582 (558neu5)
    2. PS51391 (CID)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd03562 (CID)
  2. mobidb-lite (disord...)

Residue annotation

  1. CTD binding residu...

Protein sequence

>MCA_03595_1
MSHENFDAIREDYLSSLQDLKFNSRPIITTLTVIAQENSNAAEVITKTIEEHILKCPPQYKLYALYLLDSICKNVGKPYT
IFFGLHLYRIFSDTYTLVSETVRRKMYELFLTWKQPLSNGSQLFDNVPMNKIESFLNHVQKSKSTTPVTQSPSLPNSQLA
SSSKTNETVDAGELSKNDASSSLNQSDLLKQIDKLLSLTEQRRDSNPADTDAKKQLGILLQLKSALSVQTLPADSLAVIQ
EKLTTFTNKELERLNSKKDSGKAKESKSSSLPPNIPVSPASTLPSIPSGPAATQFPRSPKGNNASLNKTLVTGPASTRKK
NRQKQHNKNHFSQQNSQGASNTLNFTPELLQQIQQIASLPSTNQQPLQPQSNFIPPAGQPQPDNNALLSLVMNSLYGNVP
QQPAQPNMYLNPQPMASDPTSSYSVLAALQGIASMSTPQPQPYGQPQLQQQPYNLAPYLAKPQPYSVGKPGTSYSGNNSV
GNYNKNGNSSNNNGPSNNNQQGSSNNSGGNNLTGLQSLEQSLRSIELSSSSLQTPRKEMIGVLYSDMLRICSTCGKRFPV
SAEGKRVRDAHFDWHFRVNKKIRDGNWTQARSWFIQEDEWIKYRDETELDFIVKNTRNRNKELAAASNPNSTSSGSKKSK
SKKKKKNNNNSDKQGKTTKDGVTESSNSAVVGSGYNTSSRVSNSGGSSSEVSIPKLSLNGLTTEQLKAKYVLAPSNKQIA
SLPCPICRDKFSTSFYEDTEEWVWKNAVEVQGRYFHATCYAEAEKTNGGKFLQQILSSGKSTNSGSGGITSTVSSSAHNP
LSTSTGANKLEASNQSAESDAISAAISKLVQQSKGSSASSIPTGPRAETAQNVPATISGIEGFDLSAILESVKRKREETD
DGNTNNNSPTIKREKI

GO term prediction

Biological Process

GO:0006369 termination of RNA polymerase II transcription
GO:0006378 mRNA polyadenylation
GO:0006379 mRNA cleavage

Molecular Function

None predicted.

Cellular Component

GO:0005849 mRNA cleavage factor complex