Protein

MIA_04432_1

Length
1,705 amino acids

Browser: contig05:1691130-1696457+

Protein function

EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)
CGD closest match:CAL0000185137orf19.2669Uncharacterized protein

Protein alignments

%idAln lengthE-value
UniRef50_A5DXY544.262%4273.78e-95Uncharacterized protein n=2 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DXY5_LODEL
MCA_01665_136.997%3738.06e-65MCA_01665_1
A0A161HJI4_9ASCO29.091%3851.65e-43Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4398 PE=4 SV=1
YCH4_YEAST34.241%2575.19e-40Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2
A0A1D8PLS1_CANAL25.000%2688.15e-24Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2669 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0806
Predicted cleavage: 15

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 200 400 600 800 1000 1200 1400 1600 1705

Detailed signature matches

  1. Domain IPR001878
    Zinc finger, CCHC-type
    1. SM00343 (c2hcfinal6)
    2. G3DSA:4.10.60.10
    3. SSF57756 (Retroviru...)
    4. PS50158 (ZF_CCHC)
  2. Domain IPR025724
    GAG-pre-integrase domain
    1. PF13976 (gag_pre-in...)
  3. Domain IPR012337
    Ribonuclease H-like domain
    1. SSF53098 (Ribonucle...)
    2. G3DSA:3.30.42...
  4. Domain IPR001584
    Integrase, catalytic core
    1. PF00665 (rve)
    2. PS50994 (INTEGRASE)
  5. Domain IPR013103
    Reverse transcriptase, RNA-dependent DNA polymerase
    1. PF07727 (RVT_2)
Unintegrated signatures no IPR
Unintegrated signatures
  1. CYTOPLASMIC_D... (C...)
  2. NON_CYTOPLASM... (N...)
  3. SSF56672 (DNA/RNA p...)
  4. TMhelix
  5. TRANSMEMBRANE (Tran...)
  6. mobidb-lite (disord...)

Protein sequence

>MIA_04432_1
MTTRVTVQQVMGRTSAYINLTSSEKLNPLNYHAWATKILLGLRAMNNGVHLYVEAGTVSPGPNESLDDLTASLDTVVHDV
ILNNISPELIEQVNDVAIRGRDLWLYLHQEYSQLQPADVISLMKSLYAVNIESGPKLVSSIRTHVATWRSIYQSLSPDSV
VAFNILASMSPNCERLIQYALEHRFDGNNADNLDINNFVRNADKWAKLLKLTGSPATLSTEAFSASSKRHGNRSRNNVLT
CFRCKKRGHTSNRCPASWDEAQAAQQDKDKDDKESKDGKSSRAWFAEAVDGFTQIVDDDSFVSYAFESKTSDVCEKFGID
CSESDDDSESELFDSSEPYNGDEDYFDYQVSESCSNSELDVVPAADPFLGCTEDPCFVSEPCVGSGDDPCDPESFIGSPI
ISFVPEPLVGSDDGVCLPCFDFLVDPVVDPSPCDIICLADPAVDPCSSVVDSLVDSVVEPFPSDVTSLADPVVDSCSFDI
DSMADPIVDPSSSVTHPTDTKKSRLSPLLYLFVFAFLLLSLILLVLLHLFPFLDSLGRFRRSPLGSGPDTFDFIHDTGAT
SHICNNISYFTNLRPTSTTIRGLGSSSAKAVGDIVVDVLARMATLLIVLYFEMFSIAGGCQFIENLDHISAVENGTTRVH
AIAMGDLYFCRFRVVLPSKPVHEVFAIEPSANLWHQRLGHASVEVLKKLSKSLSVKPTHFEVVDSHKCDACLGGKATSLP
FTGTTEKATRPLELLVSDLSGPHVATPVGHRYVLTIMDFYSRYSYVELLVKKSDASLAIRNYIARCESYFSGDSRGNRVS
YFHSDNGGEYISKDLEQFFVSKGIKHTFTVPHTPQQNGVAERLNRTLFEKAKSMLLYSHAPDYLWGEAVKCANYLRNRLP
SRTTGGVCPLQLWTGKPPSYQHMRVFGCRANVVIADAKRESKLSSNIDPGVFVGYSLDRTAYRVLVDSSIVEARDVYFDE
SQFPFMKSDKELSSNASGIAFGIGCGSGSMSGPRADCNDSGTGSSVGLNSIAGSNSSSGSSFGSRRSLPDVTSVSGSGSS
ASSTSGSTGSSPSPSLSSSPRSSSSLVVHKPRSVRRILPSSSAPLESPTLPSLPSSPILPTSDQDPSVSSPIGPSRSDLL
QVGSPAGESDNSGDSGISQRGGDIGFHPDVIASSPSPPSVELEIVPLDQEPPSSDLVKSLDQAGVSVDTKDDTQAILPKS
RSRVIAVRLPSVTPAKRPSSHDFVAPPSKHRCDDSAKLAASSVVPAKRRAEQESISYRRLKSLRFEYDDVALLVFTDPTT
FEQAMSSEDAEFWLEACVLEMSSLNRNRTWDLVDLPPGRKAINSKWVFKIKRKADGSIERYKARLVCIGFSQVEGIDYTE
TFAPVVRYETVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDIYMRQPKGFIVKGQESKVCHLNKSLYGLKQAPLCWNEK
IHGALVKLGFVRNESDYGVYTKGRGSAMVIIALYVDDLLIAGSSTHAIANTKSSLSSMFKMKDLGLVEQFLGMRVKQSPY
HITVDVCRYIVDMLEEFGMQNCSSVKTPLPTRDLSDFSESDAAADPSLYRSILNPKSMHMEAAKHTLRYLKGSAQLGLEY
RAQKVYKLVGYSDADYAQDKQDRKSFTGPASSSVESEYMSLSDASKECFWINQLLSLCQIPVPLPVTMFETIRAALPWLR
TQCFIAAPNTLMFVIMLCVTIFAVE

GO term prediction

Biological Process

GO:0015074 DNA integration

Molecular Function

GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding

Cellular Component

None predicted.