Protein

MCA_01665_1

Length
1,133 amino acids

Description: Reverse transcriptase

Browser: contigA:5122598-5126000+

RNA-seq: read pairs 2, FPKM 0.0, percentile rank 1.8% (100% = highest expression)

Protein function

Annotation:Reverse transcriptase
EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)
CGD closest match:CAL0000201372orf19.2372Uncharacterized protein

Protein alignments

%idAln lengthE-value
MIA_00003_139.11%4964e-101MIA_00003_1
UniRef50_A5DXY538.84%5023e-94Uncharacterized protein n=2 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DXY5_LODEL
A0A161HJI4_9ASCO29.09%4163e-47Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4398 PE=4 SV=1
YCH4_YEAST35.96%3175e-45Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2
A0A1D8PR73_CANAL26.44%5224e-41Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2372 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0134

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 200 400 600 800 1000 1133

Detailed signature matches

  1. Domain IPR013103
    Reverse transcriptase, RNA-dependent DNA polymerase
    1. PF07727 (RVT_2)
Unintegrated signatures no IPR
Unintegrated signatures
  1. SSF56672 (DNA/RNA p...)
  2. cd09272 (RNase_HI_R...)
  3. mobidb-lite (disord...)

Residue annotation

  1. active site cd09272
  2. RNA/DNA hybrid bin...

Protein sequence

>MCA_01665_1
MATTGSGKPHPTEFPGRNMTFDKSILQTPLNERTYPRQSKTTNSYFSPTFVAGYMRNNAEVDYFEESTFSGTDDEFYDNT
FEGAEQAIEDEKIENLNRKYNNETYVNVSDDDTSENAEDESFSDSDQYGDCDDGGDETYETENDENGESSPNPDTTMTDA
ENFQQSNIGENQQNIINENINQPDTTRQTRNVHFEDPMDTDEDMQEESSVNSESEPSNESYEYTIPRNNSDAEESSTTSS
TTYSSPTRQQRQRRDDGFMMSTNEPTNSNTTEEETHERHVQSSRITELPNDSTPMPVTPSNNRNYNDNRFDTPSVVEQVA
TSTPFQRENQAIDQQLISRNSNQQLVNTNSERQISTSNNERQLSTTNSNRQLSTTNSERQMSTTNSERQLSTTNSERQMS
TTNSERQISMTNSERQVSTTNGERSIVPTNFQDRLAAIDEELNNRYFSNRPIEAPPERPLLTNDDFQQQENNQMVSTNSN
SNPYAEDTFMTETDGTIINYEDGVTITYETDTPEAPEVPVVEAPHRPVTRSMTRRLREQAGNDEDIRFINHVSSSTIYKN
SKQETFQVVKSIEGNPDFIRVPCREVPKQDSEKWLEKMDGEMVALKVNKVYKLVKLPPGFTPLRVRWVLVKKYDANGDLE
RYKARLVVRGYLQKEGINYGETFSPVARYDTVRLVFAIATKFNHEVVHMDFTNAFQFGEIDYEIYVTQPPGYLAKGKEDH
VLKLEKSLYGLKQAPLCWSRRLNKAISKLGYKATIKEPCLYVKEENGRISIICTYVDDLLVSTPIKGEVDRIYQAFTDEG
LVVKNLGFPSKFLGMRVTKKDDTIRLDLKTYIKDLVEFAGLQHANPEITPFKSSVKLEKLKPEEAGKPIKDPKLFRSIIG
KLIFASNTCRPDISTAVSILSQYLKEPREAHLTCAKTVVKYLHNTADFSLKFKNTEGAPLVVGYADANLTNNADSKSRSG
YIIKIYGNIVSWMSKKQTRAAQSSAESELYALNKAVKEMLYFRDLLGYELGLQLEGASTIYEDNQPCIDMAKQPKINART
RYIRSDHMMIHECVEKNEISVEHIGTKKMLADGFTKILPAPEFRKFYEDLDLVPDDYQREKGMNRLEIRRDNNFFIKKKK
LLFNGLISLIRGG

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.