Protein
MIA_04325_1
Length
153 amino acids
Browser: contig05:1419503-1420108+
Protein function
| EGGNOG: | 0PQRW | LSM4 | U6 snRNA-associated Sm-like protein LSM4 |
|---|---|---|---|
| SGD closest match: | S000000914 | LSM4 | U6 snRNA-associated Sm-like protein LSm4 |
| CGD closest match: | CAL0000180200 | orf19.6458.1 | U6 snRNA complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_01125_1 | 74.16% | 89 | 2e-44 | MCA_01125_1 |
| A0A1E3PM42_9ASCO | 65.52% | 87 | 3e-35 | Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_45873 PE=4 SV=1 |
| A0A0J9XE00_GEOCN | 65.12% | 86 | 5e-35 | Similar to Saccharomyces cerevisiae YER112W LSM4 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA11s03486g PE=4 SV=1 |
| UniRef50_A0A066XP19 | 65.12% | 86 | 4e-31 | Putative small nuclear ribonucleoprotein n=15 Tax=leotiomyceta TaxID=716546 RepID=A0A066XP19_COLSU |
| A0A060T9X4_BLAAD | 59.55% | 89 | 5e-32 | ARAD1B03146p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B03146g PE=4 SV=1 |
| A0A1D8PR50_CANAL | 55.56% | 81 | 1e-28 | U6 snRNA complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6458.1 PE=4 SV=1 |
| Q6CGF6_YARLI | 53.75% | 80 | 2e-21 | YALI0A19756p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A19756g PE=4 SV=1 |
| A0A1E4TL22_9ASCO | 44.94% | 89 | 2e-19 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_56115 PE=4 SV=1 |
| LSM4_YEAST | 36.26% | 91 | 4e-14 | U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.1122
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
153
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01723
-
putative RNA bindi...
-
Sm2 motif cd01723
Protein sequence
>MIA_04325_1 MLPLGLLKAASNGPTLVELKSGDTLNGNLVACDTWMNITLKDVVLTNKEGTEFKKLPECYVKGSFIKYLQVPDILLDQIK ENQQQHRMENNRNRFQNNNNNRNQWNSGGRGNRGRNYNDRNNNNYRNNNNNRGNNYNKAPQSAPSGPTNANRF
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0000956 nuclear-transcribed mRNA catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.