Protein
MCA_01125_1
Length
152 amino acids
Gene name: LSM4
Description: U6 snRNA-associated Sm-like protein LSm4
Browser: contigA:3580726-3581375-
RNA-seq: read pairs 1294, FPKM 104.5, percentile rank 79.5% (100% = highest expression)
Protein function
| Annotation: | LSM4 | U6 snRNA-associated Sm-like protein LSm4 | |
|---|---|---|---|
| KEGG: | K12623 | LSM4 | U6 snRNA-associated Sm-like protein LSm4 |
| EGGNOG: | 0PQRW | LSM4 | U6 snRNA-associated Sm-like protein LSM4 |
| SGD closest match: | S000000914 | LSM4 | U6 snRNA-associated Sm-like protein LSm4 |
| CGD closest match: | CAL0000180200 | orf19.6458.1 | U6 snRNA complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_04325_1 | 74.16% | 89 | 6e-44 | MIA_04325_1 |
| UniRef50_A0A139AMV1 | 59.77% | 87 | 5e-32 | Sm-like ribonucleo protein n=19 Tax=Opisthokonta TaxID=33154 RepID=A0A139AMV1_GONPR |
| A0A1E3PM42_9ASCO | 62.07% | 87 | 4e-34 | Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_45873 PE=4 SV=1 |
| A0A0J9XE00_GEOCN | 61.63% | 86 | 2e-32 | Similar to Saccharomyces cerevisiae YER112W LSM4 Lsm (Like Sm) protein OS=Geotrichum candidum GN=BN980_GECA11s03486g PE=4 SV=1 |
| A0A060T9X4_BLAAD | 57.30% | 89 | 8e-32 | ARAD1B03146p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B03146g PE=4 SV=1 |
| A0A1D8PR50_CANAL | 59.26% | 81 | 6e-30 | U6 snRNA complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6458.1 PE=4 SV=1 |
| Q6CGF6_YARLI | 51.25% | 80 | 3e-21 | YALI0A19756p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A19756g PE=4 SV=1 |
| A0A1E4TL22_9ASCO | 43.82% | 89 | 2e-20 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_56115 PE=4 SV=1 |
| LSM4_YEAST | 41.11% | 90 | 9e-17 | U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0333
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
152
Detailed signature matches
no IPR
Unintegrated signatures
-
-
NON_CYTOPLASM... (N...)
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SIGNAL_PEPTIDE (Sig...)
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SIGNAL_PEPTID... (S...)
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SIGNAL_PEPTID... (S...)
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SIGNAL_PEPTID... (S...)
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mobidb-lite (disord...)
Residue annotation
-
putative oligomer ...
-
Sm1 motif cd01723
-
putative RNA bindi...
-
Sm2 motif cd01723
Protein sequence
>MCA_01125_1 MLPLGLLTAAANSPLLVELKSGETYNGILVSCDPWMNITLKEVVRTTEEGTKFEKVPECYIKGNYIKYLQVSDQILDQIK DNQQQHRMENNRNRYQSNNRNQRGSGNRGRGGRYYNDRGGYRNNNRNNNNNNNNNNNGGNNNNNASGNQNRY
GO term prediction
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0000956 nuclear-transcribed mRNA catabolic process
Molecular Function
None predicted.
Cellular Component
None predicted.