Protein
MIA_04293_1
Length
110 amino acids
Browser: contig05:1335407-1335865+
Protein function
| EGGNOG: | 0PQ6M | transcription elongation factor SPT4 | |
|---|---|---|---|
| SGD closest match: | S000003295 | SPT4 | Transcription elongation factor SPT4 |
| CGD closest match: | CAL0000191909 | SPT4 | Transcription elongation factor SPT4 |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_06086_1 | 89.091% | 110 | 1.39e-74 | MCA_06086_1 |
| A0A060T3M2_BLAAD | 76.364% | 110 | 7.39e-65 | Transcription elongation factor SPT4 OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C38412g PE=3 SV=1 |
| A0A0J9X7K2_GEOCN | 72.727% | 110 | 4.49e-62 | Transcription elongation factor SPT4 OS=Geotrichum candidum GN=BN980_GECA04s05928g PE=3 SV=1 |
| B5RSL5_YARLI | 71.818% | 110 | 2.15e-61 | Transcription elongation factor SPT4 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F13354g PE=3 SV=1 |
| A0A1E3PJ58_9ASCO | 69.091% | 110 | 2.43e-58 | Transcription elongation factor SPT4 OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51487 PE=3 SV=1 |
| SPT4_CANAL | 65.179% | 112 | 3.34e-51 | Transcription elongation factor SPT4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SPT4 PE=3 SV=1 |
| A0A1E4TMG9_9ASCO | 58.182% | 110 | 3.66e-51 | Transcription elongation factor SPT4 OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_49373 PE=3 SV=1 |
| UniRef50_H8X0U9 | 59.649% | 114 | 1.47e-45 | Uncharacterized protein n=2 Tax=Saccharomycetales TaxID=4892 RepID=H8X0U9_CANO9 |
| SPT4_YEAST | 47.573% | 103 | 5.77e-31 | Transcription elongation factor SPT4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPT4 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2766
Protein family membership
- Transcription initiation Spt4 (IPR009287)
Domains and repeats
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Domain
1
20
40
60
80
100
110
Detailed signature matches
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PIRSF025023 (Spt4)
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SSF63393 (RNA polym...)
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Residue annotation
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Zn binding site cd...
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Spt4-Spt5NGN inter...
Protein sequence
>MIA_04293_1 MSTRTERACMICAIIQPYREFINQGCPNCESLLAYKNDDELVQDCTSPSFEGLLAVCDTANSWAAKWLRVDGFEPGLYAV KVNGRLPEDIARDLEGKGVVYRPRDGSAQD
GO term prediction
Biological Process
GO:0006355 regulation of transcription, DNA-templated
GO:0032786 positive regulation of DNA-templated transcription, elongation
Molecular Function
GO:0008270 zinc ion binding
Cellular Component
GO:0005634 nucleus