Protein

MIA_04156_1

Length
1,739 amino acids


Browser: contig05:925919-931546-

Protein function

EGGNOG:0PGUDRPB1DNA-directed RNA Polymerase
SGD closest match:S000002299RPO21DNA-directed RNA polymerase II subunit RPB1
CGD closest match:CAL0000175853RPO21DNA-directed RNA polymerase subunit

Protein alignments

%idAln lengthE-value
MCA_00098_184.971%15770.0MCA_00098_1
A0A0J9X9V1_GEOCN82.527%15510.0DNA-directed RNA polymerase subunit OS=Geotrichum candidum GN=BN980_GECA06s03783g PE=3 SV=1
A0A1E3PRZ2_9ASCO72.906%15760.0DNA-directed RNA polymerase subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_44819 PE=3 SV=1
A0A060T820_BLAAD73.062%15740.0DNA-directed RNA polymerase subunit OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C32846g PE=3 SV=1
Q6CBQ3_YARLI71.911%15700.0DNA-directed RNA polymerase subunit OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C16566g PE=3 SV=2
A0A1E4TC04_9ASCO70.839%15500.0DNA-directed RNA polymerase subunit OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_65867 PE=3 SV=1
A0A167FRX0_9ASCO72.733%15110.0DNA-directed RNA polymerase subunit OS=Sugiyamaella lignohabitans GN=RPO21 PE=3 SV=1
A0A1D8PUA6_CANAL68.516%16040.0DNA-directed RNA polymerase subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPO21 PE=3 SV=1
RPB1_YEAST63.990%15690.0DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1 SV=2
UniRef50_P0405063.990%15690.0DNA-directed RNA polymerase II subunit RPB1 n=761 Tax=Eukaryota TaxID=2759 RepID=RPB1_YEAST

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0430

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
1 200 400 600 800 1000 1200 1400 1600 1739

Detailed signature matches

    1. PF04997 (RNA_pol_Rp...)
    1. SM00663 (rpolaneu7)
    1. PF00623 (RNA_pol_Rp...)
    1. PF04983 (RNA_pol_Rp...)
    1. PF05000 (RNA_pol_Rp...)
    1. PF04998 (RNA_pol_Rp...)
    1. PF04992 (RNA_pol_Rp...)
    1. PF04990 (RNA_pol_Rp...)
    1. PS00115 (RNA_POL_II...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. SSF64484 (beta and ...)
  2. cd02584 (RNAP_II_Rp...)
  3. cd02733 (RNAP_II_RP...)
  4. mobidb-lite (disord...)

Residue annotation

  1. clamp cd02733
  2. RPB1 - RPB2 interf...
  3. RPB1-TFIIB interfa...
  4. Zn-binding cd02733
  5. active site region...
  6. catalytic site cd0...
  7. Rpb1 - Rpb6 intera...
  8. cleft cd02584
  9. Rpb1 - Rpb2 intera...
  10. DNA binding site c...
  11. Rpb1 - Rpb5 intera...
  12. clamp cd02584

Protein sequence

>MIA_04156_1
MSGGRFPHSSAPLATVKEVQFGLLSPEEVRAISVAKIEYPETMDETRLRPRTGGLNDPRLGTIDRNFRCMTCKQSMAECP
GHFGCIELAKPVFHIGFINKIKKVCESVCLNCGKVLLDESHPHFAQALKIRDPKRRFNAVWALCKPKLVCEADPPEDDYN
DPLNNSNKGEHHHHGGCGNTQPTIRRDGLKLVGTWKREKGEDGNAIQEKRTLTPSEILNVFKHISNEDIRRLGLNEDYAR
PEWMIITVLPVPPPPVRPSIAINESARGEDDLTYKLADIIKASANVARCEQEGAPAHVINEFEALLQYHVATYMDNDIAG
QPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIDLDQVGVPRSIARTLTYPEVVTPYNIQRLTE
YVRNGPNEHPGAKYIIRDTGERIDLRYHKRSGDIALQYGWKVERHLLDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL
NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQICMVPLQIITPQSNKPIMGIVQDTLCGIRKMTKRDTFCDFEQVMNIL
FWIPNWNGIVPEPTIIKPKPLWTGKQMLSMCIPDGIHLRRLDKSPISPDDDGMLVVKGEIMYGVVNKKTIGASAGGLIDI
VFKEKGPYACRDFFGNIQKVVNFWLLHNGFSIGIGDTIADADTMNTITKTINTARQEVQKIINDAERNKLEREQGMTLRE
TFEQSVSKTLNQARDNAGKYAEKSLKELNNVKQMVISGSKGSFINISQMSACVGQQIVEGKRIPFGFSDRTLPHFTKDDY
SPESKGFVENSYLRGLSPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGDILQFVYGEDG
LDSCKVENQPIDTIPGNDDSFNNRYKIDLMDSSKSLKPSQIESGNDIIGDIEIQRILDEEYQQLVSDREFLRTGTFYGIE
SGWHLPVNLRRVILNAQQIFNVDPNKATNLTIPEIVNGVRQLLNKIIVIRGTDKLTKEAQDNATLLFKCLVRSVFAVKRV
VSEYRLNRDAFEWVMGEIESQFSRSLVNPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNI
KTPSMSVFLQRELALDIERAKDIIRFIQYTNLKQVVKATGIFYDPDPTTTVIEQDKDMVETFFMIPDDNLLSQLPMHSPW
VLRLELDRKKLVDVRLDMNQVAEKISASFDGHMALIWSYDNAKELVIRCRIVRDLKATEENIEAEEDQTIKKLMFQMLDN
IVLCGTPNIQRVYLTKYDIREPDETGEYQNIQAWNLETDGSNLADVMCVEGVDFTKTTCNSFVEVLSVLGIEASRQSLFR
EISSVLSFDGSYVNYRHIALLVDAMTSRGHIMAITRHGINRADTGALMRSSFEETVEILLEAAASAELDDCRGVSENIML
GQIAPLGTGSFDIVLDEDMLANAAPDYSIEENATYPSGSKYMEGSATPYDGRSPVYDNQIGSMDSIMPFSPIVNSGGDDR
GGFTEYGGAQSPFGAGGSSTPGYAPTSPFSFGNSTPGYSATTPYSPGGSGYGATSPGYAASPSYSPTSPSYSPSSPSYTP
TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPSGASPASPEYSPTSPTFNGGGASYSPASPVYSPTSPSY
SPTSPSFSPNASYSGGGGSPLSSYVPGSTSYSPTSPQFSPGSPGGFNTGHNNNNNNDRR

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated
GO:0006366 transcription from RNA polymerase II promoter

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

GO:0005665 DNA-directed RNA polymerase II, core complex