Protein

MIA_03963_1

Length
334 amino acids

Browser: contig05:364729-365798+

Protein function

EGGNOG:0PK9YRRP4Exosome complex exonuclease rrp4
SGD closest match:S000001111RRP4Exosome complex component RRP4
CGD closest match:CAL0000180832orf19.1304Exosome non-catalytic core subunit

Protein alignments

%idAln lengthE-value
MCA_02225_185.196%3310.0MCA_02225_1
A0A0J9XEX6_GEOCN77.644%3310.0Similar to Saccharomyces cerevisiae YHR069C RRP4 Exosome non-catalytic core component OS=Geotrichum candidum GN=BN980_GECA13s02804g PE=4 SV=1
A0A1E3PJX1_9ASCO65.774%3369.85e-158Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51827 PE=4 SV=1
A0A060TDX4_BLAAD66.869%3295.52e-155ARAD1D03410p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D03410g PE=4 SV=1
A0A167CUX2_9ASCO71.795%2739.87e-148Rrp4p OS=Sugiyamaella lignohabitans GN=RRP4 PE=4 SV=1
RRP4_YEAST58.642%3242.44e-131Exosome complex component RRP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP4 PE=1 SV=1
UniRef50_P3879258.642%3245.84e-128Exosome complex component RRP4 n=68 Tax=Saccharomycetales TaxID=4892 RepID=RRP4_YEAST
Q6CA66_YARLI56.193%3311.06e-125YALI0D05511p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D05511g PE=4 SV=1
Q59TN2_CANAL64.940%2511.76e-117Exosome non-catalytic core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.1304 PE=4 SV=1
A0A1E4T9T0_9ASCO55.197%2791.48e-110Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_124024 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.4517

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 334

Detailed signature matches

  1. Domain IPR025721
    Exosome complex component, N-terminal domain
    1. PF14382 (ECR1_N)
  2. Domain IPR012340
    Nucleic acid-binding, OB-fold
    1. SSF50249 (Nucleic a...)
  3. Domain IPR004088
    K Homology domain, type 1
    1. PF15985 (KH_6)
    2. SSF54791 (Eukaryoti...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.40.50...
  2. SSF110324 (Ribosoma...)
  3. cd05789 (S1_Rrp4)

Residue annotation

  1. subunit interface ...
  2. RNA binding site c...

Protein sequence

>MIA_03963_1
MAIVKISRPVRQRIIHEHYDKDGDVMFEDADSDYELGIDMSNVNAGTVNNTNLVTPGELVTDETTWMRGHGTYSEDNKIY
SSVAGTILRVNKLLSVKPLRGRYPPVIGDHVVGRITEVGTKRWKVDIGGSQEAVLMLGSVNLPGGVLRRKSDSDELQMRK
LLKEGDLLNAEVQSIFQDGAASLHTRSLRYGKLRNGYFLAVPSSLVIKSKLHAYKLPDNIDCILGVNGYIWLSKRTKASA
AENANVSITRLEEEAGLEIYSDVNEEISTSTREAIARYANCIHALAYAEIGINESRIIAAYDASNIYKTAADLVENEVKL
AIANEVIKREREAN

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003723 RNA binding

Cellular Component

None predicted.