Protein

MCA_02225_1

Length
330 amino acids

Gene name: RRP4

Description: Exosome complex component RRP4

Browser: contigB:654910-655966-

RNA-seq: read pairs 524, FPKM 19.6, percentile rank 40.8% (100% = highest expression)

Protein function

Annotation:RRP4Exosome complex component RRP4
KEGG:K03679RRP4 exosome complex component RRP4
EGGNOG:0PK9YRRP4Exosome complex exonuclease rrp4
SGD closest match:S000001111RRP4Exosome complex component RRP4
CGD closest match:CAL0000180832orf19.1304Exosome non-catalytic core subunit

Protein alignments

%idAln lengthE-value
MIA_03963_185.20%3310.0MIA_03963_1
A0A0J9XEX6_GEOCN75.83%3310.0Similar to Saccharomyces cerevisiae YHR069C RRP4 Exosome non-catalytic core component OS=Geotrichum candidum GN=BN980_GECA13s02804g PE=4 SV=1
A0A060TDX4_BLAAD65.44%3272e-154ARAD1D03410p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D03410g PE=4 SV=1
A0A1E3PJX1_9ASCO63.17%3349e-151Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51827 PE=4 SV=1
A0A167CUX2_9ASCO69.60%2732e-142Rrp4p OS=Sugiyamaella lignohabitans GN=RRP4 PE=4 SV=1
RRP4_YEAST58.57%3213e-131Exosome complex component RRP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP4 PE=1 SV=1
UniRef50_P3879258.57%3218e-128Exosome complex component RRP4 n=68 Tax=Saccharomycetales TaxID=4892 RepID=RRP4_YEAST
Q6CA66_YARLI54.46%3255e-120YALI0D05511p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D05511g PE=4 SV=1
Q59TN2_CANAL66.53%2514e-118Exosome non-catalytic core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.1304 PE=4 SV=1
A0A1E4T9T0_9ASCO54.26%2829e-110Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_124024 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.3002

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 300 330

Detailed signature matches

  1. Domain IPR025721
    Exosome complex component, N-terminal domain
    1. PF14382 (ECR1_N)
  2. Domain IPR012340
    Nucleic acid-binding, OB-fold
    1. SSF50249 (Nucleic a...)
  3. Domain IPR004088
    K Homology domain, type 1
    1. PF15985 (KH_6)
    2. SSF54791 (Eukaryoti...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.40.50...
  2. SSF110324 (Ribosoma...)
  3. cd05789 (S1_Rrp4)

Residue annotation

  1. subunit interface ...
  2. RNA binding site c...

Protein sequence

>MCA_02225_1
MTIVTITRPVRQKIIEERADQDGDIMFKDAENINEGLINSNAGTVNNTNIVTPGELVTDETTWMRGHGTYTSGNKIYSSV
AGTISRVNRLLSVKPLKGRYPPVIGDHVVGRITEVGNKRWKVDIGGSQEAILMLGSVNLPGGVLRRKSDSDELQMRKLLK
EGDLLNAEVQSIFQDGAASLHTRSLRYGKLRNGYFIKIPSSLVIKSKVHAYKLPDNIDCILGVNGYIWLSKRTKASAAEN
ANISITRLEEEAGFEIYSDVNEEISRTTREIIARYANCILALAYAEVGVNEARIIAAYDASNTYKSAADLVENEVKLVIA
NEVLSREQAS

GO term prediction

Biological Process

None predicted.

Molecular Function

GO:0003723 RNA binding

Cellular Component

None predicted.