Protein

MIA_03951_1

Length
73 amino acids

Browser: contig05:347126-347399-

Protein function

EGGNOG:0PR3TRPC10RNA polymerases I, II and III
SGD closest match:S000001185RPC10DNA-directed RNA polymerases I, II, and III subunit RPABC4
CGD closest match:CAL0000192095RPC10DNA-directed RNA polymerase core subunit

Protein alignments

%idAln lengthE-value
MCA_02281_179.452%735.82e-41MCA_02281_1
A0A0J9XC61_GEOCN66.667%723.22e-33Similar to Saccharomyces cerevisiae YHR143W-A RPC10 RNA polymerase subunit ABC10-alpha OS=Geotrichum candidum GN=BN980_GECA09s00945g PE=4 SV=1
A0A1E3PQ04_9ASCO58.904%731.15e-28DNA-directed RNA polymerase II subunit K OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49943 PE=4 SV=1
UniRef50_A0A099P3W057.534%732.04e-22Uncharacterized protein n=2 Tax=Pichia kudriavzevii TaxID=4909 RepID=A0A099P3W0_PICKU
Q6CBC5_YARLI53.425%739.37e-26YALI0C20075p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C20075g PE=4 SV=2
A0A060T9Q1_BLAAD54.930%713.93e-24ARAD1D13574p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D13574g PE=4 SV=1
RPAB4_YEAST49.315%731.15e-22DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC10 PE=1 SV=1
A0A1D8PFX2_CANAL50.704%713.68e-21DNA-directed RNA polymerase core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPC10 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.6144
Predicted cleavage: 36

Protein family membership

Domains and repeats

  1. Domain
1 10 20 30 40 50 60 73

Detailed signature matches

  1. Family IPR006591
    RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
    1. PF03604 (DNA_RNApol...)
    2. SM00659 (rpolcxc3)
  2. Domain IPR029040
    RNA polymerase subunit RPABC4/transcription elongation factor Spt4
    1. SSF63393 (RNA polym...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.20.28.30
  2. PD012151

Protein sequence

>MIA_03951_1
MSKERFIPPTSQASLSAAISGTTVTRSLGVNYVCANCHMRVTLGKGEPVRCKDCGHRVLYKERTRRMIQFEAR

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.