Protein

MCA_02281_1

Length
73 amino acids

Gene name: RPC10

Description: DNA-directed RNA polymerases I, II, and III subunit RPABC4

Browser: contigB:794846-795157-

RNA-seq: read pairs 1473, FPKM 246.0, percentile rank 90.3% (100% = highest expression)

Protein function

Annotation:RPC10DNA-directed RNA polymerases I, II, and III subunit RPABC4
KEGG:K03009RPB12 DNA-directed RNA polymerases I, II, and III subunit RPABC4
EGGNOG:0PR3TRPC10RNA polymerases I, II and III
SGD closest match:S000001185RPC10DNA-directed RNA polymerases I, II, and III subunit RPABC4
CGD closest match:CAL0000192095RPC10DNA-directed RNA polymerase core subunit

Protein alignments

%idAln lengthE-value
MIA_03951_179.45%731e-39MIA_03951_1
A0A0J9XC61_GEOCN61.11%722e-29Similar to Saccharomyces cerevisiae YHR143W-A RPC10 RNA polymerase subunit ABC10-alpha OS=Geotrichum candidum GN=BN980_GECA09s00945g PE=4 SV=1
A0A1E3PQ04_9ASCO52.05%739e-26DNA-directed RNA polymerase II subunit K OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_49943 PE=4 SV=1
Q6CBC5_YARLI49.32%731e-23YALI0C20075p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C20075g PE=4 SV=2
UniRef50_Q6CBC549.32%733e-20YALI0C20075p n=3 Tax=Dipodascaceae TaxID=34353 RepID=Q6CBC5_YARLI
A0A060T9Q1_BLAAD52.11%718e-22ARAD1D13574p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D13574g PE=4 SV=1
RPAB4_YEAST46.58%734e-19DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC10 PE=1 SV=1
A0A1D8PFX2_CANAL47.89%714e-18DNA-directed RNA polymerase core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RPC10 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0895

Protein family membership

Domains and repeats

  1. Domain
1 10 20 30 40 50 60 73

Detailed signature matches

  1. Family IPR006591
    RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
    1. PF03604 (DNA_RNApol...)
    2. SM00659 (rpolcxc3)
  2. Domain IPR029040
    RNA polymerase subunit RPABC4/transcription elongation factor Spt4
    1. SSF63393 (RNA polym...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:2.20.28.30
  2. PD012151

Protein sequence

>MCA_02281_1
MSRERFIPPTSQTDISAAISGVTINRSQGVNYTCGNCAERVTLGKGEPVRCKDCGSRILYKERTRRVIQFEAR

GO term prediction

Biological Process

GO:0006351 transcription, DNA-templated

Molecular Function

GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity

Cellular Component

None predicted.