Protein

MIA_03561_1

Length
909 amino acids

Browser: contig04:1544988-1547718-

Protein function

EGGNOG:0PIX7FG01244.1Pre-mRNA-processing factor 39
SGD closest match:S000004509PRP39Pre-mRNA-processing factor 39
CGD closest match:CAL0000200082PRP39Prp39p

Protein alignments

%idAln lengthE-value
A0A0J9XAD5_GEOCN35.375%6532.40e-102Similar to Saccharomyces cerevisiae YML046W PRP39 U1 snRNP protein involved in splicing OS=Geotrichum candidum GN=BN980_GECA06s05158g PE=4 SV=1
UniRef50_A0A0J9XAD535.375%6534.91e-99Similar to Saccharomyces cerevisiae YML046W PRP39 U1 snRNP protein involved in splicing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XAD5_GEOCN
MCA_00819_135.714%5601.90e-94MCA_00819_1
A0A1E3PEZ9_9ASCO26.448%7941.42e-68Putative mRNA splicing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53136 PE=4 SV=1
A0A167FH39_9ASCO33.747%4835.09e-69Prp39p OS=Sugiyamaella lignohabitans GN=PRP39 PE=4 SV=1
A0A1E4TH24_9ASCO33.415%4102.76e-60Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2727 PE=4 SV=1
Q6C8X1_YARLI29.508%4881.45e-54YALI0D16225p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D16225g PE=4 SV=1
A0A060SXJ9_BLAAD27.329%4834.93e-50ARAD1A04422p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A04422g PE=4 SV=1
PRP39_YEAST23.362%3514.02e-23Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1
A0A1D8PGF5_CANAL24.315%2927.85e-16Prp39p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PRP39 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0195

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Repeat
1 100 200 300 400 500 600 700 800 909

Detailed signature matches

  1. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
    2. SSF48452 (TPR-like)
  2. Repeat IPR003107
    HAT (Half-A-TPR) repeat
    1. SM00386 (hat_new_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MIA_03561_1
MVNLTLNQDDSQWNQAYAAVKSDPDNLDFWERLIEHTERVQNKASQEVLHYLRSKQHSEKPKSHTPAFMQIYTTIKSTTR
EVYDKFLERFPLLFAYWSKYVALEVGFTEEHKLEEGATSSDDDTSDKSEWWNPLLNVSSTALAVHERAVAAFPLSIDLWS
AYTAFLVQGLTEEDPAATKKSERKRHIDTVRSVFERAAAAIGCDFMSHVFWDEYLAFEGSHSAENIPKASLKILARIVRL
PLHQYARYYEQFAEELATFLNSLYGDLNTANVDEKTALLVIRPTEIAYLKEKAADNIITPQAILDYFANIIFARTQQGTT
DRWAYESLISRSYFHVVELEPDQLENWKSYLIWAENEHKRIQTLFSNSQHDKSALDQEELYWKECITEDLVEDAFEQART
IYERALIPCALYDSVWLSYVRWLYSLARTAARPDGEPEQQKQQLIEDTRNVYRRAANIYVPVTRPFIRFQYSLFEESLGE
IARARDILQAMQEEACEGMTLAATYTEEKTASLSREKIKKKERAERARPWKDASLKRTLKNIDFTEPFFYRVELEKRAGG
VGSALKYVQFLLGDENNKDVDNLLDKTNLSTETEGILLKLSKPISDYPEIVTFLVTTKALLVADLYKYSKHPAGRLQLFA
QSVALARKYFQNHIVAAKAASSSAAPSLNSVGAAGFGLLSTISHFWVSYFEFELSVVKKINRLSLESLQAFESDTFDVSS
DHQASSTNHDNKRKAAFESNFDGYALVIKVIQTYMDPLVDLLLSKVGIPPTTINDLVRTYVDDVLMGTIGRRFRVQETNT
ESVLTRLIKRARVPVDPQVTPIKEMLRLTPQSGTLSGNHNATVGSNTPGAASLSKHGYSFWPAARAAELEIELTGPLVVR
TRLLAKLADDGNPDTTRKRLRNQGQEVFA

GO term prediction

Biological Process

GO:0006396 RNA processing

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.