Protein

MCA_00819_1

Length
1,315 amino acids

Browser: contigA:2548614-2552562-

RNA-seq: read pairs 3870, FPKM 36.3, percentile rank 58.2% (100% = highest expression)

Protein function

EGGNOG:0PJ2NPGUG_00282HAT
SGD closest match:S000004509PRP39Pre-mRNA-processing factor 39
CGD closest match:CAL0000200082PRP39Prp39p

Protein alignments

%idAln lengthE-value
MIA_03561_135.54%5606e-93MIA_03561_1
A0A0J9XAD5_GEOCN33.58%4112e-54Similar to Saccharomyces cerevisiae YML046W PRP39 U1 snRNP protein involved in splicing OS=Geotrichum candidum GN=BN980_GECA06s05158g PE=4 SV=1
UniRef50_A0A0J9XAD533.58%4114e-51Similar to Saccharomyces cerevisiae YML046W PRP39 U1 snRNP protein involved in splicing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XAD5_GEOCN
A0A1E4TH24_9ASCO27.79%4216e-40Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2727 PE=4 SV=1
A0A167FH39_9ASCO27.34%4178e-36Prp39p OS=Sugiyamaella lignohabitans GN=PRP39 PE=4 SV=1
A0A1E3PEZ9_9ASCO29.61%3318e-35Putative mRNA splicing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_53136 PE=4 SV=1
Q6C8X1_YARLI26.60%4215e-31YALI0D16225p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D16225g PE=4 SV=1
A0A060SXJ9_BLAAD25.59%4222e-27ARAD1A04422p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1A04422g PE=4 SV=1
PRP39_YEAST21.97%2641e-13Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1
A0A1D8PGF5_CANAL25.70%2494e-10Prp39p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PRP39 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0207

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
1 200 400 600 800 1000 1200 1315

Detailed signature matches

  1. Domain IPR015943
    WD40/YVTN repeat-like-containing domain
    1. G3DSA:2.130.1...
  2. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. SSF48452 (TPR-like)
  3. Repeat IPR003107
    HAT (Half-A-TPR) repeat
    1. SM00386 (hat_new_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MCA_00819_1
MDSFILHSDDHVWKACYLAVQANSDSLELWERLIDQTERIQANASELIRVEFLENLDYLKSHMEVQTLDKNSQQLQTPSA
PKKRIPKRKKPEDQQQQQQSAPTLKDGQVQVVSIAFPVQYTSIKNTTRHLYKKMLDKFPLLFAYWIKYAQMEVAFSEEKS
KLFYNLKKLTVSSLATSQTNYSVTELQAQLQYDNLHSAEKLALQNEDFVKFVISNEKDDIFCAIRHDYDWDSRLNVSSRA
LRVYQKAGLAFPMSMDVWIAYLDFLIAGLVIPLDIPAPKEEEEEGQQQQQQQESKIKKEQHNQETRDLYSQQIDYITQIF
ETARSHIGRDFLSDSFWDKYIAFLQNHEAYSDDASGELARLEALTTVLASIARIPLHQYARYYEQFTETIAVYFDKLKNG
KVIDSWDDLSIEDDVALKVLTQTELNRLKKSSANESNQITAQAILDHFANVIFLQTQTGTNDRWNFESLITRNYFHVLEL
DQEEIDNWDKYINWETEKYFQLRETYKQQKETPPDESVSPEDIVDLETISDEFLQLETLYERALVPCAMYDTFWLKYTRS
LYNIADTFLQNKYLDVPDDDSEVKTEDENIKTRAKEIYEQFIEKARNAYIRASTVFVPITRPFIRFQYALFEESLGEIEK
SRSILNGLQEAMCVAASKMATNSAQEFSKGGGNNNNNKIKSKNDFSNRYENYRSNNNETIEDEGIDDEFESSLIGIVDES
EPFFYRLEFERRVGGPFHVLEYIDMLLQDNFITQNSTVFDLLKPTLDFPSSNKQEEKKNTSFFPLKNHVLSFKIKSLLVS
TRAQLISSIGWSSVEFALKNGSANSATIDHNSVAATPAKKAAPPKRGRKSKKQLEQEANEAAAAEAEKQKELESGSSSVS
ALSSSSFAPLIESIKLTRLIFQKSSVSPFCFESAHFWVTFFEWEVENIKRIQQLIYYYCEMENSEDEQNKSKKSTIEALL
KSFIGLYNQDFELYKRGLFSDSKPSSSDSNNSNNIKKRKRATADDLINTNNNKHKDDYTFNPLSMYSPFSQTHIFSTDKF
YFHKYKQQQSSSLDNSNPLLPKSFGPILINENDEDNFLYICSSAFIQNMTILYLDPIVDLLLSKVGIPPVVIADLIRTYI
DDILVGLLGGGVRTSANADSTTIVKQEMISNNNNNNSDDNPDKNLFKLKPVVELNLNPTILSSTNSTATSFINNDLTDNW
SVNRAIDLELELTGPLTVKRRYLCKISSFDPLDSSSSSSSSKSTKPIVTTLPGGVSTVINTNTNTEKGYGLVDTDYLQGI
SGPTSVSKQQINGNMTLISQTMKRLKRENGHPGLF

GO term prediction

Biological Process

GO:0006396 RNA processing

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.