Protein
MIA_03405_1
Length
323 amino acids
Browser: contig04:1121397-1122448+
Protein function
| EGGNOG: | 0PFX1 | DST1 | transcription elongation factor SII |
|---|---|---|---|
| SGD closest match: | S000003011 | DST1 | Transcription elongation factor S-II |
| CGD closest match: | CAL0000174383 | orf19.4537 | Uncharacterized protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_04525_1 | 69.350% | 323 | 8.56e-149 | MCA_04525_1 |
| A0A0J9XGJ8_GEOCN | 58.675% | 317 | 1.13e-122 | Similar to Saccharomyces cerevisiae YGL043W DST1 General transcription elongation factor TFIIS OS=Geotrichum candidum GN=BN980_GECA16s01275g PE=4 SV=1 |
| A0A060TJ04_BLAAD | 55.696% | 316 | 3.29e-108 | ARAD1D42856p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D42856g PE=4 SV=1 |
| Q6C6I8_YARLI | 51.582% | 316 | 2.95e-101 | YALI0E09196p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E09196g PE=4 SV=1 |
| UniRef50_Q6C6I8 | 51.582% | 316 | 6.83e-98 | YALI0E09196p n=6 Tax=Saccharomycetales TaxID=4892 RepID=Q6C6I8_YARLI |
| A0A1E4TEF5_9ASCO | 45.570% | 316 | 2.01e-93 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_1801 PE=4 SV=1 |
| A0A167CJP6_9ASCO | 62.222% | 180 | 1.22e-78 | Dst1p OS=Sugiyamaella lignohabitans GN=DST1 PE=4 SV=1 |
| A0A1E3PEF7_9ASCO | 59.777% | 179 | 4.00e-72 | Transcription elongation factor OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52797 PE=4 SV=1 |
| TFS2_YEAST | 33.333% | 318 | 3.82e-59 | Transcription elongation factor S-II OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4 |
| Q59T94_CANAL | 49.718% | 177 | 7.42e-58 | Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4537 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0156
Protein family membership
- Transcription elongation factor, IIS-type (IPR035100)
- Transcription elongation factor, TFIIS (IPR006289)
Domains and repeats
-
Domain
1
50
100
150
200
250
323
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
SSF57783 (Zinc beta...)
-
cd13749 (Zn-ribbon_...)
-
mobidb-lite (disord...)
Residue annotation
-
trimer interface c...
-
Zn binding site cd...
Protein sequence
>MIA_03405_1 MTASGAPLEIQEIRSMMHDLEKAGGSTDKIKMLLSQFEERVKPTEKLLRETKLGIAVNKYRTHSDKEIADQVKRIIKKWK DQVTAQKNLAKHKHPHAHSHLGASSGSAGHSGSGASNGSAQASGSSSVSPTAGTPTPSPAPSASGKTRTASSDGVKTSIH DDRVRNSCLELTYNALVIGATESGSQILAVAKEVEEAVFAGERGTTPGYRSKFRSLVSNLKDMSNPNLRRRVVTGEISGK RLYSMSPQEMASDEIKKDIEQFKKENLFNAQAAVQKRAITDRFTCGRCKQKKVSYFQMQTRSADEPLTTFCTCENCGKRW KFS
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Cellular Component
GO:0005634 nucleus