Protein

MIA_03404_1

Length
314 amino acids

Browser: contig04:1119984-1120929-

Protein function

EGGNOG:0PMBWFG00370.1polyadenylation factor subunit CstF64
SGD closest match:S000003012RNA15mRNA 3'-end-processing protein RNA15
CGD closest match:CAL0000175047orf19.4538Uncharacterized protein

Protein alignments

%idAln lengthE-value
MCA_04524_176.316%1902.00e-102MCA_04524_1
A0A0J9XHS0_GEOCN68.852%1831.16e-84Similar to Saccharomyces cerevisiae YGL044C RNA15 Component of the cleavage and polyadenylation factor I (CF I) OS=Geotrichum candidum GN=BN980_GECA17s01374g PE=4 SV=1
UniRef50_A0A0J9XHS068.852%1832.37e-81Similar to Saccharomyces cerevisiae YGL044C RNA15 Component of the cleavage and polyadenylation factor I (CF I) n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XHS0_GEOCN
A0A1E3PFZ8_9ASCO57.216%1941.09e-72Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_71470 PE=4 SV=1
A0A167CJL6_9ASCO56.180%1781.88e-66Rna15p OS=Sugiyamaella lignohabitans GN=RNA15 PE=4 SV=1
A0A060TI19_BLAAD50.761%1971.38e-63ARAD1D42834p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D42834g PE=4 SV=1
Q6C6I9_YARLI48.663%1875.74e-57YALI0E09174p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_E09174g PE=4 SV=1
RNA15_YEAST33.654%2081.81e-34mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1
A0A1E4TFM7_9ASCO27.134%3287.82e-29Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2290 PE=4 SV=1
Q59T93_CANAL36.111%1801.02e-27Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4538 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0176

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 50 100 150 200 250 314

Detailed signature matches

  1. Domain IPR000504
    RNA recognition motif domain
    1. SSF54928 (RNA-bindi...)
    2. PS50102 (RRM)
    3. SM00360 (rrm1_1)
    4. PF00076 (RRM_1)
  2. Domain IPR025742
    Cleavage stimulation factor subunit 2, hinge domain
    1. PF14327 (CSTF2_hinge)
  3. Domain IPR026896
    Transcription termination and cleavage factor, C-terminal domain
    1. PF14304 (CSTF_C)
Unintegrated signatures no IPR
Unintegrated signatures
  1. G3DSA:3.30.70...
  2. cd12398 (RRM_CSTF2_...)
  3. mobidb-lite (disord...)

Residue annotation

  1. RNA binding site c...

Protein sequence

>MIA_03404_1
MVSEPIPSRVIYVGSIPYDQTEEQILDIFKSVGPVASFRLVFDKDSGKSKGFGFVEYHDTETAASAVRNLNNYQIGSRNL
KVDFSHETSITAPTLVSYPEATLPQLPHGTMPTPGVTAHDSVNKTLMKLTRDQMLDVILDLKTMSLKNPSLACELFRVSP
QLSYMVVQSMLMLGIIDNNAILSLVDQNFQQQQPQPQQQPPQQQQQSLPSSLPSQPVAFQNIPQGMRPFGGTPPPTQPRL
HTPPPATLPAQPKLHTPETSSPSANIAPEMPPQQIELIRKVMQLTDEQVAQLSEDQRHALLLLREQVRSGKFQL

GO term prediction

Biological Process

GO:0031124 mRNA 3'-end processing

Molecular Function

GO:0003676 nucleic acid binding

Cellular Component

None predicted.