Protein
MIA_03113_1
Length
119 amino acids
Browser: contig04:272281-272641+
Protein function
| EGGNOG: | 0PQ51 | RPB9 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates |
|---|---|---|---|
| SGD closest match: | S000003038 | RPB9 | DNA-directed RNA polymerase II subunit RPB9 |
| CGD closest match: | CAL0000191376 | orf19.2276 | DNA-directed RNA polymerase subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_03083_1 | 77.966% | 118 | 1.21e-70 | MCA_03083_1 |
| A0A0J9XG66_GEOCN | 76.106% | 113 | 3.12e-62 | DNA-directed RNA polymerase subunit OS=Geotrichum candidum GN=BN980_GECA15s02881g PE=3 SV=1 |
| A0A060T4U6_BLAAD | 71.053% | 114 | 2.56e-59 | DNA-directed RNA polymerase subunit OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B05984g PE=3 SV=1 |
| A0A1E3PFE5_9ASCO | 70.270% | 111 | 6.49e-58 | DNA-directed RNA polymerase subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_27946 PE=3 SV=1 |
| RPB9_YEAST | 67.273% | 110 | 1.23e-54 | DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB9 PE=1 SV=1 |
| UniRef50_P27999 | 67.273% | 110 | 2.94e-51 | DNA-directed RNA polymerase II subunit RPB9 n=55 Tax=Saccharomycetales TaxID=4892 RepID=RPB9_YEAST |
| Q59Z24_CANAL | 64.865% | 111 | 1.86e-53 | DNA-directed RNA polymerase subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2276 PE=3 SV=1 |
| Q6C1C2_YARLI | 61.616% | 99 | 8.17e-45 | DNA-directed RNA polymerase subunit OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F17534g PE=3 SV=1 |
| A0A1E4T9X0_9ASCO | 63.636% | 99 | 1.46e-44 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32112 PE=3 SV=1 |
| A0A167DBL4_9ASCO | 64.865% | 37 | 1.05e-08 | Putative spidroin-1-like OS=Sugiyamaella lignohabitans GN=AWJ20_989 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0071
Protein family membership
Domains and repeats
-
Domain
1
20
40
60
80
100
119
Detailed signature matches
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PIRSF005586 (RNApol...)
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-
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cd10508 (Zn-ribbon_...)
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-
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PS01030 (RNA_POL_M_...)
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no IPR
Unintegrated signatures
-
-
SSF57783 (Zinc beta...)
Residue annotation
-
trimer interface c...
-
Zn binding site cd...
Protein sequence
>MIA_03113_1 MASFKFCLDCNNMLYPQADNENKRLLYSCRNCPYSEQADNPLVYYHRLESDLSETAGVTNDIGSDPTLPRSNKECPKCHN KQCVFFQSQQRRAITSMVPFFVCLSCHHTFRPTDPESQG
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006379 mRNA cleavage
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Cellular Component
None predicted.