Protein
MCA_03083_1
Length
118 amino acids
Gene name: RPB9
Description: DNA-directed RNA polymerase II subunit RPB9
Browser: contigB:3326264-3326832-
RNA-seq: read pairs 646, FPKM 67.1, percentile rank 71.6% (100% = highest expression)
Protein function
| Annotation: | RPB9 | DNA-directed RNA polymerase II subunit RPB9 | |
|---|---|---|---|
| KEGG: | K03017 | RPB9 | DNA-directed RNA polymerase II subunit RPB9 |
| EGGNOG: | 0PQ51 | RPB9 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates |
| SGD closest match: | S000003038 | RPB9 | DNA-directed RNA polymerase II subunit RPB9 |
| CGD closest match: | CAL0000191376 | orf19.2276 | DNA-directed RNA polymerase subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03113_1 | 77.97% | 118 | 4e-69 | MIA_03113_1 |
| A0A0J9XG66_GEOCN | 75.68% | 111 | 3e-60 | DNA-directed RNA polymerase subunit OS=Geotrichum candidum GN=BN980_GECA15s02881g PE=3 SV=1 |
| A0A060T4U6_BLAAD | 67.54% | 114 | 3e-57 | DNA-directed RNA polymerase subunit OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B05984g PE=3 SV=1 |
| A0A1E3PFE5_9ASCO | 67.57% | 111 | 2e-54 | DNA-directed RNA polymerase subunit OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_27946 PE=3 SV=1 |
| UniRef50_A3LYD6 | 63.96% | 111 | 2e-49 | DNA-directed RNA polymerase subunit n=141 Tax=Fungi TaxID=4751 RepID=A3LYD6_PICST |
| Q59Z24_CANAL | 62.16% | 111 | 4e-50 | DNA-directed RNA polymerase subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2276 PE=3 SV=1 |
| RPB9_YEAST | 61.82% | 110 | 1e-49 | DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB9 PE=1 SV=1 |
| Q6C1C2_YARLI | 59.60% | 99 | 1e-42 | DNA-directed RNA polymerase subunit OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F17534g PE=3 SV=1 |
| A0A1E4T9X0_9ASCO | 58.59% | 99 | 8e-42 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_32112 PE=3 SV=1 |
| A0A167DBL4_9ASCO | 59.38% | 32 | 9e-07 | Putative spidroin-1-like OS=Sugiyamaella lignohabitans GN=AWJ20_989 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0068
Protein family membership
Domains and repeats
-
Domain
1
20
40
60
80
100
118
Detailed signature matches
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PIRSF005586 (RNApol...)
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-
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cd10508 (Zn-ribbon_...)
-
-
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PS01030 (RNA_POL_M_...)
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no IPR
Unintegrated signatures
-
-
-
SSF57783 (Zinc beta...)
Residue annotation
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trimer interface c...
-
Zn binding site cd...
Protein sequence
>MCA_03083_1 MASFQFCLECNNMLYPNADNENHRLLYSCRNCNYTQLAESPLVYHHKLDLDMSETAGITNDVGSDPTLPRSNKECPKCHN KECVFFQTQQHRAMTTMVPFFVCLSCHNTFRPTDAVSR
GO term prediction
Biological Process
GO:0006351 transcription, DNA-templated
GO:0006379 mRNA cleavage
Molecular Function
GO:0003676 nucleic acid binding
GO:0008270 zinc ion binding
Cellular Component
None predicted.