Protein

MIA_03096_1

Length
635 amino acids

Browser: contig04:231577-233531-

Protein function

EGGNOG:0PKJYTFB1RNA polymerase II transcription factor
SGD closest match:S000002719TFB1RNA polymerase II transcription factor B subunit 1
CGD closest match:CAL0000174174orf19.5297TFIIH/NER complex subunit

Protein alignments

%idAln lengthE-value
MCA_02958_146.851%6511.53e-174MCA_02958_1
A0A0J9X4P8_GEOCN39.117%6343.91e-117Similar to Saccharomyces cerevisiae YDR311W TFB1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair OS=Geotrichum candidum GN=BN980_GECA03s01561g PE=4 SV=1
UniRef50_A0A0J9X4P839.117%6348.01e-114Similar to Saccharomyces cerevisiae YDR311W TFB1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4P8_GEOCN
A0A060T1E9_BLAAD34.350%6236.96e-87ARAD1C24178p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C24178g PE=4 SV=1
A0A1E3PLE1_9ASCO33.635%6635.97e-77Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50166 PE=4 SV=1
A0A167EAL2_9ASCO33.284%6707.02e-72TFIIH/NER complex subunit TFB1 OS=Sugiyamaella lignohabitans GN=TFB1 PE=4 SV=1
Q6CEW1_YARLI41.257%3666.18e-66YALI0B12452p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B12452g PE=4 SV=1
A0A1E4TJ34_9ASCO29.091%6054.37e-45Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_30079 PE=4 SV=1
TFB1_YEAST32.924%4075.76e-44RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1
A0A1D8PLZ6_CANAL39.908%2186.50e-29TFIIH/NER complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5297 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0412

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 100 200 300 400 500 635

Detailed signature matches

  1. Domain IPR011993
    PH domain-like
    1. G3DSA:2.30.29.30
    2. SSF50729 (PH domain...)
  2. Domain IPR013876
    TFIIH p62 subunit, N-terminal
    1. PF08567 (PH_TFIIH)
  3. Domain IPR005607
    BSD domain
    1. PF03909 (BSD)
    2. SM00751 (wurzfinal6)
    3. G3DSA:1.10.39...
    4. SSF140383 (BSD doma...)
    5. PS50858 (BSD)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. cd13229 (PH_TFIIH)
  3. mobidb-lite (disord...)

Residue annotation

  1. peptide binding si...

Protein sequence

>MIA_03096_1
MAPLSNPAKYKKSQGVLTIDLEADKLLWQGDGAVAPSVQLKLSNIEHLQATPATSAKSMIKIMVKDETDPFTFLFSARPI
LASVRDVLSALIHERQAKESAKSQPDAAKSSSPPAPAAAPGKKPRQKVAPPSAVPLDTKSLLRNLKLQQDVIQANADIKR
AFEDAVITGGLSHEDFWSTRIHVLRAHVLATSQKRGPYNVLSTIKHKTNSENQQTLTLSVEKINDIYEQYPIVYQAYKDN
VPPMDSNVFWVEFFSSRLFRRLRGDRIKPSDPTNTILDKYLDYLDNYETNKQATLLRKRKQDEDARTGDNGGSGEDIEVP
FFINIEGNEENDPQRLGNRPDYTMRAGAEGPSALTLLKSMNWLSQRMVYGQEGSAVAGGANGSAGGARAVIVPMHDQDES
HLMDELRIRGLEDEQQPEYMKLEMKAADESALLQQQVAANNVVAANGGGGGEPEPAVDYGDSLRYMEENVRGSVDLQEVG
AGPGRAEALKRAQKHIMRTVKLRSKEGGDNRGAAEREVEEAVGGKVGGVHATAVEFLRHFWAHFLSGDAAQAQAVNRLVA
GLRRSLEKIDALEKREEGQPYCAQVIAALGPLVDSITKALEAYQGAIAAYQAEAAGAAGAAGVAGTPVNGTSNGG

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.