Protein
MCA_02958_1
Length
682 amino acids
Gene name: TFB1
Description: RNA polymerase II transcription factor B subunit 1
Browser: contigB:2899556-2901682+
RNA-seq: read pairs 426, FPKM 7.7, percentile rank 21.8% (100% = highest expression)
Protein function
| Annotation: | TFB1 | RNA polymerase II transcription factor B subunit 1 | |
|---|---|---|---|
| KEGG: | K03141 | TFIIH1 | transcription initiation factor TFIIH subunit 1 |
| EGGNOG: | 0PKJY | TFB1 | RNA polymerase II transcription factor |
| SGD closest match: | S000002719 | TFB1 | RNA polymerase II transcription factor B subunit 1 |
| CGD closest match: | CAL0000174174 | orf19.5297 | TFIIH/NER complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_03096_1 | 47.79% | 655 | 0.0 | MIA_03096_1 |
| A0A0J9X4P8_GEOCN | 36.47% | 669 | 3e-122 | Similar to Saccharomyces cerevisiae YDR311W TFB1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair OS=Geotrichum candidum GN=BN980_GECA03s01561g PE=4 SV=1 |
| UniRef50_A0A0J9X4P8 | 36.47% | 669 | 6e-119 | Similar to Saccharomyces cerevisiae YDR311W TFB1 Subunit of TFIIH and nucleotide excision repair factor 3 complexes, required for nucleotide excision repair n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X4P8_GEOCN |
| A0A1E3PLE1_9ASCO | 33.90% | 705 | 2e-100 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_50166 PE=4 SV=1 |
| A0A060T1E9_BLAAD | 33.48% | 669 | 3e-99 | ARAD1C24178p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C24178g PE=4 SV=1 |
| A0A167EAL2_9ASCO | 33.20% | 723 | 6e-85 | TFIIH/NER complex subunit TFB1 OS=Sugiyamaella lignohabitans GN=TFB1 PE=4 SV=1 |
| TFB1_YEAST | 29.74% | 696 | 2e-74 | RNA polymerase II transcription factor B subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFB1 PE=1 SV=1 |
| Q6CEW1_YARLI | 34.64% | 407 | 3e-62 | YALI0B12452p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B12452g PE=4 SV=1 |
| A0A1E4TJ34_9ASCO | 26.94% | 657 | 2e-58 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_30079 PE=4 SV=1 |
| A0A1D8PLZ6_CANAL | 29.70% | 606 | 4e-53 | TFIIH/NER complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.5297 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0563
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Domain
1
100
200
300
400
500
600
682
Detailed signature matches
no IPR
Unintegrated signatures
-
-
cd13229 (PH_TFIIH)
-
mobidb-lite (disord...)
Residue annotation
-
peptide binding si...
Protein sequence
>MCA_02958_1 MTVLTNPAKYKKAQGVLSIDTDANKLYWQGDGAVAPSVQISLNENINVQATPPTSAKSLIKILTENAGEMYTFQFSAKPI LQSVRNELSTIVNKFKHKDKSNTPAASTPQPEVSSASTTPKPLTRKQRLKQLQLQQRQQQNAVRLDPKTLIKNLELQEKV LRNDAQLRKAFEDAVMTRGLPNEDFWSTRIGILRAYILKTSQRRGPYNVLSTIKQEASSSQTGSQSDRDNEVKVNLSEEK ILDIYEQYPIVYQAYKDNVPPMTPTQFWQAFFSSKLFRRLKGDKVHIADAHPILDKYLDYLDNMENMPGINGDSSSTLKR KRDGEEEANPAQEPDSISVPFFLNIEGNEENDPQKLGNRPDITMRSGTDGPGPLMLLKSMNRLSQKMVYGQEMLGSESSA KTISAAELPNGGNPARPTIPMHDTDESHLVDELRIKGLDSEEPPSYQELKMRPKDQDSIRQELLSTDPELVKEIESTTDG ITGVNGKDGNTINKAVSYEEGVKYMAENLSTRLDLQQVGKSDINGSDGVDTTTDAIKRAQKHIAKTIKLRSKEAGANRTS TEMNLEQDVQANIGMIHSTSMEFLRHFWIHFLSGDPGQASAINKLITSLKKCLERINQVELSNKDEEKRQLVIAALEPLV NSIHKAMETYQSVAVANASSTTNSTANNTNNNTPTNTTTTTS
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.