Protein

MIA_03004_1

Length
1,101 amino acids

Browser: contig04:3994-7559+

Protein function

EGGNOG:0QDZFReverse transcriptase (RNA-dependent DNA polymerase)
CGD closest match:CAL0000185137orf19.2669Uncharacterized protein

Protein alignments

%idAln lengthE-value
UniRef50_A5DXY545.16%4962e-125Uncharacterized protein n=2 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5DXY5_LODEL
MCA_01665_136.69%4962e-86MCA_01665_1
YCH4_YEAST38.38%2847e-62Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2
A0A161HJI4_9ASCO27.47%4951e-46Gag-pol fusion protein OS=Sugiyamaella lignohabitans GN=AWJ20_4398 PE=4 SV=1
A0A1D8PLS1_CANAL24.72%5426e-40Uncharacterized protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.2669 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.1599

Protein family membership

None predicted.

Domains and repeats

  1. Domain
1 200 400 600 800 1000 1101

Detailed signature matches

  1. Domain IPR025724
    GAG-pre-integrase domain
    1. PF13976 (gag_pre-in...)
  2. Domain IPR013103
    Reverse transcriptase, RNA-dependent DNA polymerase
    1. PF07727 (RVT_2)
Unintegrated signatures no IPR
Unintegrated signatures
  1. CYTOPLASMIC_D... (C...)
  2. NON_CYTOPLASM... (N...)
  3. SSF56672 (DNA/RNA p...)
  4. TMhelix
  5. TRANSMEMBRANE (Tran...)
  6. cd09272 (RNase_HI_R...)
  7. mobidb-lite (disord...)

Residue annotation

  1. active site cd09272
  2. RNA/DNA hybrid bin...

Protein sequence

>MIA_03004_1
MLNKKSRLSPLFYLFVFAFLLLSLILFVLMHLFPFLDLRQSVHQAFVAESAASAEAHLVVGPDTFDFIHDTGATSHICNN
ISYFTNLRPTSTTIRGLGSSSAKAVGDIVVDVLGQDGNPFDRVVLRDVLYVPNIPRNLFAARRAIAGGCQFIENLDHISA
VENGTTRVHAIAMGDLYFCRFRVVLPSKPVHEVFAVEPSANLWHQRLGHASVEVLKKLSKSLSVKPTHFEVVDSHKCDAC
LGGKATSLPFTGTTEKAKSMLLYSHAPDYLWGEAVKCANYLRNRLPSRTTGGVCPLQLWTGKPPSYQHMRVFGCRANVVI
ADAKRESKLSSNIDPGVFVGYSLDRTAYRVLVDSSIVEARDVYFDESQFPFMKNDKELSSNASGIAFGIGCGSGSMSLPD
VTSVSGSGSSASSTSGSTGSSPSPSLSSSPRSSSSLVVHKPRSVRRILPSSSAPLESPTLPSLPSSPILPSSDQDPSVSS
PIVLLNLIYRKLVPQCPPSVELEIVPLDQEPPSSDLVKSLDQAGVSVDTKDDTQAILPKSRSRVVAVRLPSVTPAKRPSS
HDFVAPPSKHRCDDSAKQPASSVVPAKRRAEEESISYRRLKSLRFEYDDVALLVFTDPTTFEQAMSSEDAEFWLEACVVE
MSSLKRNRTWDLVDLPPGRKAINSKWVFKIKRKADGAIERYKARLVTVRIVLAIAAQFGFQVHHMDVETAFLNGDLKEDI
YMRQPKGFIVKGQESKVCHLNKSLYGLKQAPLCWNEKIHGALVKLGFVRNESDYGVYTKGRGSAMVIIALYVDDLLIAGN
STQAIANTKSSLSSMFKMKDLGLVEQFLGMRVKQSPYHITVDVSRYIVDMLEEFGMQNCSSVKTPLPTRDLSDFSESDAA
ADPSLYRSIIGKLIYAANCARPDLAVAVSFLCRYMQNPKSMHMEAAKHTLRYLKGSAQLGLEYRAQKVYKLVGYSDADYA
QDKQDRKSFTGYVFILSGGPITWACRKQVSPASSSVESEYMSLSDASKECFWINQLLSLCQIPVPLPVTMFEDNQGCIAL
AQNPVFHRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFETLRVSLE

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.