MIA_02911_1

Protein

Length

113 amino acids

Browser: contig03:2069251-2069639-

Protein function

EGGNOG:	0PNRK	FG07018.1	Small nuclear ribonucleoprotein
SGD closest match:	S000004265	SMD2	Small nuclear ribonucleoprotein Sm D2
CGD closest match:	CAL0000180090	SMD2	mRNA splicing protein

Protein alignments

	%id	Aln length	E-value
MCA_00935_2	86.726%	113	2.56e-71	MCA_00935_2
A0A0J9XC57_GEOCN	82.143%	112	5.10e-64	Similar to Saccharomyces cerevisiae YLR275W SMD2 Core Sm protein Sm D2, part of heteroheptameric complex that is part of the spliceosomal U1, U2, U4, and U5 snRNPs OS=Geotrichum candidum GN=BN980_GECA08s04608g PE=4 SV=1
A0A060TCD5_BLAAD	80.357%	112	1.68e-59	ARAD1B15752p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B15752g PE=4 SV=1
UniRef50_O14036	73.874%	111	1.57e-54	Small nuclear ribonucleoprotein Sm D2 n=47 Tax=Eukaryota TaxID=2759 RepID=SMD2_SCHPO
A0A1E3PIM3_9ASCO	73.451%	113	8.53e-56	Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51859 PE=4 SV=1
Q6C2M3_YARLI	70.270%	111	5.39e-54	YALI0F06644p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F06644g PE=4 SV=1
A0A1E4TC27_9ASCO	65.487%	113	2.11e-52	Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_58243 PE=4 SV=1
A0A1D8PHP3_CANAL	61.607%	112	7.47e-46	mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SMD2 PE=4 SV=1
SMD2_YEAST	56.757%	111	3.17e-34	Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0614

Protein family membership

Small nuclear ribonucleoprotein Sm D2 (IPR027248)

Domains and repeats

Domain
28 - 111
LSM domain (IPR010920)
LSM domain, eukaryotic/archaea-type (IPR001163)

1 20 40 60 80 100 113

Detailed signature matches

IPR027248

Small nuclear ribonucleoprotein Sm D2
1. cd01720 (Sm_D2)
  
  25 - 112
  
  CDD
  cd01720 (Sm_D2)
IPR010920

LSM domain
1. SSF50182 (Sm-like r...)
  
  28 - 110
  
  SUPERFAMILY
  SSF50182 (Sm-like ribonucleoproteins)
IPR001163

LSM domain, eukaryotic/archaea-type
1. PF01423 (LSM)
  
  40 - 109
  
  Pfam
  PF01423 (LSM)
2. SM00651 (Sm3)
  
  31 - 111
  
  SMART
  SM00651 (Sm3)

no IPR

Unintegrated signatures

G3DSA:2.30.30...

21 - 112

GENE3D
G3DSA:2.30.30.100 (G3DSA:2.30.30.100)

Residue annotation

RNA binding site c...

26N

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

29P

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

30L

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

48R

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

49N

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

50N

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

62R

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

63H

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

65N

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

102R

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)

104D

RNA binding site
26N, 29P, 30L, 48R, 49N, 50N, 62R, 63H, 65N, 102R, 104D
CDD
cd01720 (Sm_D2)
heptamer interface...

32V

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

40H

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

46S

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

47C

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

48R

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

49N

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

50N

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

57V

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

58K

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

61D

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

62R

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

63H

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

64S

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

65N

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

69E

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

70N

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

73E

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

74M

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

92R

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

93D

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

94R

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

96I

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

98K

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

99M

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

100F

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

101L

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

102R

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

103G

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

104D

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

106V

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

107I

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

108L

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

109V

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

110L

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

111K

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)

112S

heptamer interface
32V, 40H, 46S, 47C, 48R, 49N, 50N, 57V, 58K, 61D, 62R, 63H, 64S, 65N, 69E, 70N, 73E, 74M, 92R, 93D, 94R, 96I, 98K, 99M, 100F, 101L, 102R, 103G, 104D, 106V, 107I, 108L, 109V, 110L, 111K, 112S
CDD
cd01720 (Sm_D2)
Sm1 motif cd01720

43V

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

44L

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

45I

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

46S

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

47C

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

48R

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

49N

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

51K

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

52K

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

53L

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

54L

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

55A

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

56R

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

57V

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

58K

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

59A

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

60F

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

61D

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

62R

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

63H

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

65N

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

66M

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

67V

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

68L

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)

69E

Sm1 motif
43V, 44L, 45I, 46S, 47C, 48R, 49N, 51K, 52K, 53L, 54L, 55A, 56R, 57V, 58K, 59A, 60F, 61D, 62R, 63H, 65N, 66M, 67V, 68L, 69E
CDD
cd01720 (Sm_D2)
Sm2 motif cd01720

98K

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

99M

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

100F

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

101L

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

102R

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

103G

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

104D

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

105S

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

106V

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

107I

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

108L

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

109V

Sm2 motif
98K, 99M, 100F, 101L, 102R, 103G, 104D, 105S, 106V, 107I, 108L, 109V
CDD
cd01720 (Sm_D2)

Protein sequence

>MIA_02911_1
MADLVRMPRSELTPQDLARLEEYEFNNGPLSVLQSAVQDHSPVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTETVK
GPNGGKPKTVNRDRFISKMFLRGDSVILVLKST

GO term prediction

Biological Process

GO:0008380 RNA splicing

Molecular Function

None predicted.

Cellular Component

GO:0030532 small nuclear ribonucleoprotein complex

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Entry type

Status

Per-residue features