Protein
MCA_00935_2
Length
113 amino acids
Browser: contigA:2946664-2947076+
RNA-seq: read pairs 706, FPKM 76.5, percentile rank 74.5% (100% = highest expression)
Protein function
| KEGG: | K11096 | SNRPD2 | small nuclear ribonucleoprotein D2 |
|---|---|---|---|
| EGGNOG: | 0PNRK | FG07018.1 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000004265 | SMD2 | Small nuclear ribonucleoprotein Sm D2 |
| CGD closest match: | CAL0000180090 | SMD2 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02911_1 | 86.73% | 113 | 9e-70 | MIA_02911_1 |
| A0A0J9XC57_GEOCN | 79.46% | 112 | 7e-63 | Similar to Saccharomyces cerevisiae YLR275W SMD2 Core Sm protein Sm D2, part of heteroheptameric complex that is part of the spliceosomal U1, U2, U4, and U5 snRNPs OS=Geotrichum candidum GN=BN980_GECA08s04608g PE=4 SV=1 |
| A0A060TCD5_BLAAD | 76.79% | 112 | 2e-56 | ARAD1B15752p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B15752g PE=4 SV=1 |
| Q6C2M3_YARLI | 72.07% | 111 | 4e-55 | YALI0F06644p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F06644g PE=4 SV=1 |
| A0A1E3PIM3_9ASCO | 72.57% | 113 | 7e-55 | Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51859 PE=4 SV=1 |
| UniRef50_O14036 | 72.97% | 111 | 3e-51 | Small nuclear ribonucleoprotein Sm D2 n=47 Tax=Eukaryota TaxID=2759 RepID=SMD2_SCHPO |
| A0A1E4TC27_9ASCO | 64.60% | 113 | 7e-50 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_58243 PE=4 SV=1 |
| A0A1D8PHP3_CANAL | 58.93% | 112 | 2e-42 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SMD2 PE=4 SV=1 |
| SMD2_YEAST | 59.46% | 111 | 2e-33 | Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0113
Protein family membership
- Small nuclear ribonucleoprotein Sm D2 (IPR027248)
Domains and repeats
-
Domain
1
20
40
60
80
100
113
Detailed signature matches
no IPR
Unintegrated signatures
Residue annotation
-
RNA binding site c...
-
heptamer interface...
-
Sm1 motif cd01720
-
Sm2 motif cd01720
Protein sequence
>MCA_00935_2 MADLIGIDKSELSEQDLQRLEEYEFSNGPLSVLQSAVQDHTPVLISCRNNKKLLARVKAFDRHSNMVLENVKEMWTETVK GSGNAKPKTINRDRFISKMFLRGDSVILVLKST
GO term prediction
Biological Process
GO:0008380 RNA splicing
Molecular Function
None predicted.
Cellular Component
GO:0030532 small nuclear ribonucleoprotein complex