Protein

MIA_02730_1

Length
956 amino acids

Browser: contig03:1576101-1579078+

Protein function

EGGNOG:0PM4YPRP24factor PRP24
SGD closest match:S000004881PRP24U4/U6 snRNA-associated-splicing factor PRP24
CGD closest match:CAL0000175203CAALFM_CR01700CAU6 snRNP complex subunit

Protein alignments

%idAln lengthE-value
MCA_00806_144.622%10040.0MCA_00806_1
A0A0J9YHM9_GEOCN41.754%9580.0Similar to Saccharomyces cerevisiae YMR268C PRP24 Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling OS=Geotrichum candidum GN=BN980_GECA01s06819g PE=4 SV=1
UniRef50_A0A0J9YHM941.754%9580.0Similar to Saccharomyces cerevisiae YMR268C PRP24 Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9YHM9_GEOCN
A0A167CI78_9ASCO37.214%10050.0Prp24p OS=Sugiyamaella lignohabitans GN=PRP24 PE=4 SV=1
A0A060T5D6_BLAAD34.815%9450.0ARAD1C11264p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C11264g PE=4 SV=1
A0A1E3PLC7_9ASCO28.108%9256.33e-94Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51351 PE=4 SV=1
A0A1D8PS18_CANAL24.272%8245.97e-49U6 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR01700CA PE=4 SV=1
PRP24_YEAST32.249%3691.67e-44U4/U6 snRNA-associated-splicing factor PRP24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP24 PE=1 SV=1
Q6C378_YARLI30.576%2786.80e-33YALI0F01969p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F01969g PE=4 SV=1
A0A1E4TL65_9ASCO25.683%1832.72e-11Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_87448 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0052

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Repeat
1 100 200 300 400 500 600 700 800 900 956

Detailed signature matches

  1. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
    2. SSF48452 (TPR-like)
  2. Domain IPR000504
    RNA recognition motif domain
    1. SSF54928 (RNA-bindi...)
    2. SM00360 (rrm1_1)
    3. PS50102 (RRM)
    4. PF00076 (RRM_1)
  3. Domain IPR034398
    Prp24, RNA recognition motif2
    1. cd12297 (RRM2_Prp24)
  4. Domain IPR031766
    Occluded RNA-recognition motif
    1. PF16842 (RRM_occluded)
  5. Repeat IPR003107
    HAT (Half-A-TPR) repeat
    1. SM00386 (hat_new_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. G3DSA:3.30.70...
  3. mobidb-lite (disord...)

Residue annotation

  1. RNA binding site c...

Protein sequence

>MIA_02730_1
MDIDMNDNDVQSEKEQLEKDLLDVQRLSAEIESNPYSHQAYVDLINKFKSMGQFMAEELQNARSSMSEKVLLSQDEWIQW
LSDTNLPEEVRLEIYRKAVSRSPTPKMWSEYVSYLVSRYNEDNHSKIYSREIILGVLAKGYNVVKYNIPESHIVWNQYRD
FIAIDLEIPQKRNDTFLKIKELYLQRLAIPHKTLSDTFSDFSSLITTYDNENYENELIFANKIYQNTLKAIELRTPWEQS
LYESKSLDNYAAYIYWEITLPKKLQDPGLVGALYERTIQDYPYVPEVWDDYLFYTTEKLYTDNLLGGMIDRSLLANPHSG
VLWAHRLRFSKEDGNEEICDLKQTFDNIAAFKEPEKYNDWKLFMIEWVTHFTRVFDLTLENSKDNSFLEETIEGCEDAIE
KIIRDGKDDTNFDLEVMISNFFLKIEYESHIWEKLKKTRGKYSEYWIQWAEYAKKSDIHKDKARLIFEEAINRKNIDWPE
KVFEQYILFERNNGTCRTVQKALAKTRILSKILQHRRRQTLPLNEVNIQSENVGSAEIISHKRIRNEVDDIDDEKSDSKN
ENLEIKSKKSNHNTTRDRENNTIVVSGISKTTTKNDLEKFFAECGEIISVNVVENNIGILEFADHISALSALTKDMKKIK
GHEIHVRSGEATTIYVTNFPPEFGENDIQKLFEQYGQILSIRFPSLKFNTHRRFCYVQFSSGENAKKASENLNGEQIGEL
TLQVLISDPSKKAIRKGALYEDREVFIKGLDFNSVDEKELRNVLGKYGTIERIRLPLSRVNQKQGRLHDGYGFVVFSSAS
EAEAVIKSLNGTRLSSRMIHVSLASDKNAGPKKLSKVVFDNESERGSGSHDRSDILARTLNISNLPDTVNDSQLRVIFEK
YGSLKQILLRPDLNSAKVEYTNVADAGKAELALQGHFISGQHISINSPIIPNPKNAASGAGHLSFIPRAAMRNKRL

GO term prediction

Biological Process

GO:0006396 RNA processing

Molecular Function

GO:0003676 nucleic acid binding
GO:0005515 protein binding

Cellular Component

None predicted.