Protein
MCA_00806_1
Length
996 amino acids
Gene name: PRP24
Description: U4/U6 snRNA-associated-splicing factor PRP24
Browser: contigA:2511294-2514340-
RNA-seq: read pairs 2071, FPKM 25.7, percentile rank 48.3% (100% = highest expression)
Protein function
| Annotation: | PRP24 | U4/U6 snRNA-associated-splicing factor PRP24 | |
|---|---|---|---|
| EGGNOG: | 0PM4Y | PRP24 | factor PRP24 |
| SGD closest match: | S000004881 | PRP24 | U4/U6 snRNA-associated-splicing factor PRP24 |
| CGD closest match: | CAL0000175203 | CAALFM_CR01700CA | U6 snRNP complex subunit |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02730_1 | 44.30% | 1009 | 0.0 | MIA_02730_1 |
| A0A0J9YHM9_GEOCN | 39.09% | 962 | 0.0 | Similar to Saccharomyces cerevisiae YMR268C PRP24 Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling OS=Geotrichum candidum GN=BN980_GECA01s06819g PE=4 SV=1 |
| UniRef50_A0A0J9YHM9 | 39.09% | 962 | 0.0 | Similar to Saccharomyces cerevisiae YMR268C PRP24 Splicing factor that reanneals U4 and U6 snRNPs during spliceosome recycling n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9YHM9_GEOCN |
| A0A167CI78_9ASCO | 33.64% | 984 | 5e-154 | Prp24p OS=Sugiyamaella lignohabitans GN=PRP24 PE=4 SV=1 |
| A0A060T5D6_BLAAD | 33.57% | 971 | 1e-152 | ARAD1C11264p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C11264g PE=4 SV=1 |
| A0A1E3PLC7_9ASCO | 27.65% | 962 | 4e-93 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51351 PE=4 SV=1 |
| A0A1D8PS18_CANAL | 23.97% | 897 | 7e-43 | U6 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR01700CA PE=4 SV=1 |
| PRP24_YEAST | 35.38% | 260 | 1e-35 | U4/U6 snRNA-associated-splicing factor PRP24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP24 PE=1 SV=1 |
| Q6C378_YARLI | 32.97% | 279 | 7e-33 | YALI0F01969p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F01969g PE=4 SV=1 |
| A0A1E4T9Q8_9ASCO | 27.62% | 210 | 3e-06 | Polyadenylate-binding protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_70868 PE=3 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0263
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
1
100
200
300
400
500
600
700
800
900
996
Detailed signature matches
no IPR
Unintegrated signatures
-
-
-
mobidb-lite (disord...)
Residue annotation
-
RNA binding site c...
Protein sequence
>MCA_00806_1 MDTEMEQSSDFDHKTSIQNDLNEIRKLSSQLEANPNSRDAYVNLIKKMKSMGPFMADELQTTRTTMAAKMMLTEEDWVEW VSEPSLPMEVKIAIYKKAVKTLPSPSMWSKYTSFLISHYDPAASSENLFSYDSILQILYQAYSQVAYNIPQSHIIWNQYR DFVSIKLEDHNAKALTIDQLKLIYIERLKIPHKTLEDTYVDFSTFITNYDNANYEKEMTAANKIYLNTKATLELRDEWEL LISKENSLDNYAAYIQWEITRPQKQQLRQLVLALYERTIFDYPSIPEVWDDYIMYYIMDKEEMLGKVSHPGIQSLIFYPG TMTRQNGLYPLTERSLLACPHSGKLWAHKFQALYLMGASTEELIDFKNLFDNTKIFSEPEKYLDWKAFMLEWFSFGKEYF RYYGECYGDAGTIILDSAESAMERAELEGEIDPDFDLELLILYTLKAVDSDDAQWGVLEQNHGNNIQFWIRRIEWECYSQ SHFDYDFISYLYRRVISKNLPGIERIYPDYLYFERMHGTVASHMLVSAEIRNKYKIAQAKAQERLQKENTVPIALNATQA IPSAIDNSAVYRSVETTNHPAKRTHEEVEETNTTHTTDPYTNSEYTSKSKTQKIVNKPSRDRENNSVVVSDLPENPTEKE LKKVFKDCGEIASIRLSKPKRVATIEFRDHIGAMAGLTKDKKKIRDTEISVTSGKDTTLYVTNFPPHYTESEISKLFSGF GTVMSIRFPSLKFNTHRRFCYVQLTNAEDAEDAVAELDNKEIDGYKIVVKISDPSKKEERKGALYEDREVFIKGIDFNGV DEKELRKILEPYGSIERVRLPLSRGNEKLGRLHDGYGFVVFSKASEAESAVKSLDGTKLGSRTLHISLASNRNTKKSSRI VLEDDGSIENSGADIAARTLFVSNIPDKVNDTHIKVLFEKYGPLKQVYYIPERGSAKVEFVNVADSGKAQLGLNGYKMGN KIIRVSDKPENASNNKPAPPPKAALSFVPRSVRRHK
GO term prediction
Biological Process
GO:0006396 RNA processing
Molecular Function
GO:0003676 nucleic acid binding
GO:0005515 protein binding
Cellular Component
None predicted.