Protein
MIA_02598_1
Length
624 amino acids
Browser: contig03:1229859-1231734+
Protein function
| EGGNOG: | 0PK0X | FG09919.1 | RNA polymerase II transcription elongation factor Rtf1p |
|---|---|---|---|
| SGD closest match: | S000003213 | RTF1 | RNA polymerase-associated protein RTF1 |
| CGD closest match: | CAL0000177561 | RTF1 | Rtf1p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_01698_1 | 58.496% | 359 | 7.24e-104 | MCA_01698_1 |
| A0A0J9X3Z8_GEOCN | 58.681% | 288 | 6.78e-97 | Similar to Saccharomyces cerevisiae YGL244W RTF1 Subunit of the RNA polymerase II-associated Paf1 complex OS=Geotrichum candidum GN=BN980_GECA02s01627g PE=4 SV=1 |
| UniRef50_A0A0J9X3Z8 | 58.681% | 288 | 1.39e-93 | Similar to Saccharomyces cerevisiae YGL244W RTF1 Subunit of the RNA polymerase II-associated Paf1 complex n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X3Z8_GEOCN |
| A0A1E3PJ49_9ASCO | 45.376% | 346 | 4.88e-75 | Plus-3-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51914 PE=4 SV=1 |
| A0A167DZE0_9ASCO | 47.138% | 297 | 3.41e-68 | Rtf1p OS=Sugiyamaella lignohabitans GN=RTF1 PE=4 SV=1 |
| A0A060TDB4_BLAAD | 41.379% | 348 | 1.20e-65 | ARAD1D46596p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D46596g PE=4 SV=1 |
| A0A1E4TH48_9ASCO | 42.456% | 285 | 1.85e-58 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2802 PE=4 SV=1 |
| Q6CAL0_YARLI | 39.474% | 266 | 1.69e-41 | YALI0D01892p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D01892g PE=4 SV=1 |
| A0A1D8PQN1_CANAL | 30.928% | 291 | 1.70e-32 | Rtf1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RTF1 PE=4 SV=1 |
| RTF1_YEAST | 29.630% | 270 | 3.48e-27 | RNA polymerase-associated protein RTF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTF1 PE=1 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0132
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
624
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MIA_02598_1 MSNLDDDLLALAGEDVFSDDQQDSKHSKQKKSRHSPADEEAHESSKASGDHHDDNGDDDDDDLEALALGDKSSKEDSHGS GHDDNDAVHETIEEFEEFRNPYPLEGKYKDEKDRAELMAMKEIKRETILFERLLEIENHKQKNFLLQRARERKAREEKDQ ASASAAAAAAVAAEAAASEKGGRAKRDKSASSSSKQSQLSELKKKREEKREKTGRQNIPYRDRRSGADDEGYSDEDEEDD DDRYSDEDSGRRKRSSRSAGRGEKRRGGRYDDEEDDSFIENDEAVEWAEPTHKKSREATLSDLNKIRFGRTLFAKFCHNP NFDKVVIGTFVRVNIGTDPEKHIPVYRICEVKRLIRSKPYTFQNRTVDEALVVASAKNEKTFEMGICSDSPFTEDEFRWW KQHMNRDNIPFPSAKKCERKLAELLEFKEHKLNDLEVKTMIERRQKLSSNVGGSVGVSRVLQKSQLLEQRAIALSNGDEV AVENIDHKLAAIESQTLKAAQGESHSSSLSKLAAVNARNRRANVSGIRQAELKNVGERRKTAGKSGGVMDPFSRVRTSAK IFHQSEDAQDQNPNGTAQETELERKRKLEEAEAERKRRRNASRLAFNAVDNKIANINFHLEIEI
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003677 DNA binding
Cellular Component
None predicted.