Protein
MCA_01698_1
Length
586 amino acids
Gene name: RTF1
Description: RNA polymerase-associated protein RTF1
Browser: contigA:5214883-5216644-
RNA-seq: read pairs 2857, FPKM 60.1, percentile rank 69.3% (100% = highest expression)
Protein function
| Annotation: | RTF1 | RNA polymerase-associated protein RTF1 | |
|---|---|---|---|
| KEGG: | K15178 | RTF1 | RNA polymerase-associated protein RTF1 |
| EGGNOG: | 0PK0X | FG09919.1 | RNA polymerase II transcription elongation factor Rtf1p |
| SGD closest match: | S000003213 | RTF1 | RNA polymerase-associated protein RTF1 |
| CGD closest match: | CAL0000177561 | RTF1 | Rtf1p |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9X3Z8_GEOCN | 47.66% | 512 | 1e-136 | Similar to Saccharomyces cerevisiae YGL244W RTF1 Subunit of the RNA polymerase II-associated Paf1 complex OS=Geotrichum candidum GN=BN980_GECA02s01627g PE=4 SV=1 |
| UniRef50_A0A0J9X3Z8 | 47.66% | 512 | 3e-133 | Similar to Saccharomyces cerevisiae YGL244W RTF1 Subunit of the RNA polymerase II-associated Paf1 complex n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X3Z8_GEOCN |
| MIA_02598_1 | 58.38% | 358 | 8e-118 | MIA_02598_1 |
| A0A167DZE0_9ASCO | 41.78% | 517 | 9e-116 | Rtf1p OS=Sugiyamaella lignohabitans GN=RTF1 PE=4 SV=1 |
| A0A1E3PJ49_9ASCO | 40.63% | 507 | 4e-103 | Plus-3-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_51914 PE=4 SV=1 |
| A0A1E4TH48_9ASCO | 37.56% | 442 | 1e-81 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2802 PE=4 SV=1 |
| A0A060TDB4_BLAAD | 40.34% | 357 | 3e-79 | ARAD1D46596p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D46596g PE=4 SV=1 |
| Q6CAL0_YARLI | 41.98% | 293 | 4e-61 | YALI0D01892p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D01892g PE=4 SV=1 |
| A0A1D8PQN1_CANAL | 30.95% | 517 | 3e-56 | Rtf1p OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RTF1 PE=4 SV=1 |
| RTF1_YEAST | 29.46% | 465 | 7e-45 | RNA polymerase-associated protein RTF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTF1 PE=1 SV=2 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0105
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
100
200
300
400
500
586
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_01698_1 MSDIDEDLLALAGEDDVSDNGAPKHRSNDNHSKGRDDIDDDDDDDLEELALGTKRKRSNKHIDRDDEEDEEFEDDDIKES SQIKPFNKYPLENKYIDEKDKEYLLSLTEIERETILFDRLQEIENYKLMSQLSKRAEERDQQKAQATRTSKREKVSTSSK KQSKLSELRKQREEKHNREKTGRPNVPYRGHGSDDEDDDSGSYDDEYDSDDNRRHRGDNDDDFIEDDERDSRKKSGSVEW AKPQKAPELTLNDINKIRFGRSLFAKYCHNPGFESVVVGTFVRVNIGFDREKQKPVYRICQVVSVEPSKPYTFQNRTVDE VLRVASGKNEKNFEMGICSDSPFTEDEFRWWKHNLSKGGISLPSVKSINRKYDELMEFKNHTLTDAEVMKIVERRQKLSA TSGVGVSRILQKSALQEQRLIALSENDLETVEKIDRQLASLEAKPSSSSTFSSGLSSGNLGDSSHGVNSGSTSSLDKLAA VNQRNRRANVSGIRQAELKNVEERRKSGKNNTGDPFSRVRTSAKIFHKSFDENEAASTNSSSQKESENDKKEAEAEAKKR RLAAKMAYNHVDDMIAKIDFALEIEI
GO term prediction
Biological Process
None predicted.
Molecular Function
GO:0003677 DNA binding
Cellular Component
None predicted.