Protein

MIA_02398_1

Length
228 amino acids

Browser: contig03:688996-689816+

Protein function

EGGNOG:0PMYBRRP46Exosome complex
SGD closest match:S000003327RRP46Exosome complex component RRP46
CGD closest match:CAL0000179859orf19.81Exosome non-catalytic core subunit

Protein alignments

%idAln lengthE-value
MCA_01694_158.296%2231.32e-77MCA_01694_1
A0A0J9X8C7_GEOCN52.814%2311.92e-69Similar to Saccharomyces cerevisiae YGR095C RRP46 Exosome non-catalytic core component OS=Geotrichum candidum GN=BN980_GECA05s02573g PE=4 SV=1
A0A167EK80_9ASCO44.796%2212.59e-59Rrp46p OS=Sugiyamaella lignohabitans GN=RRP46 PE=4 SV=1
UniRef50_A0A167EK8044.796%2217.12e-56Rrp46p n=4 Tax=Saccharomycetales TaxID=4892 RepID=A0A167EK80_9ASCO
A0A060THK0_BLAAD42.152%2237.88e-52ARAD1D38984p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D38984g PE=4 SV=1
A0A1E3PGY4_9ASCO44.545%2202.04e-48Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_83583 PE=4 SV=1
Q6C108_YARLI39.785%1869.06e-43YALI0F20240p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F20240g PE=4 SV=1
RRP46_YEAST34.715%1937.05e-32Exosome complex component RRP46 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP46 PE=1 SV=2
A0A1D8PHQ0_CANAL28.679%2659.88e-21Exosome non-catalytic core subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.81 PE=4 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0262

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Domain
1 50 100 150 200 228

Detailed signature matches

  1. Domain IPR027408
    PNPase/RNase PH domain
    1. G3DSA:3.30.23...
  2. Domain IPR020568
    Ribosomal protein S5 domain 2-type fold
    1. SSF54211 (Ribosomal...)
  3. Domain IPR001247
    Exoribonuclease, phosphorolytic domain 1
    1. PF01138 (RNase_PH)
  4. Domain IPR015847
    Exoribonuclease, phosphorolytic domain 2
    1. SSF55666 (Ribonucle...)
Unintegrated signatures no IPR
Unintegrated signatures
  1. cd11372 (RNase_PH_R...)

Residue annotation

  1. Rrp40 interface cd...
  2. hexamer interface ...

Protein sequence

>MIA_02398_1
MSQYPPPEVQTSVLTQVDGSCEWAQNTTTVVTSVSGPIEARTRDEIPTAATVDLVVRPQIGLSTTREHLMEEQIQRAFSS
IIFKVLHPRALIQVVVQIIEAGELPTYNILELSAAINSLSISLIDAGIPLLSIACAAPVAVIEHEAEPQFVVYPTSQQLQ
EASSWHIVVYEIKESQPTRLVLCESTGQFTKDQLYKVLELAAEAAAKSFQSIKIATAEKLKRDFKWKN

GO term prediction

Biological Process

None predicted.

Molecular Function

None predicted.

Cellular Component

None predicted.