Protein

MIA_02381_1

Length
637 amino acids

Browser: contig03:657479-659393+

Protein function

EGGNOG:0PIX7FG01244.1Pre-mRNA-processing factor 39
SGD closest match:S000002643PRP42U1 small nuclear ribonucleoprotein component PRP42
CGD closest match:CAL0000176091PRP42mRNA splicing protein

Protein alignments

%idAln lengthE-value
MCA_01632_144.39%6603e-172MCA_01632_1
A0A0J9XKX2_GEOCN42.05%6164e-143Similar to Saccharomyces cerevisiae YDR235W PRP42 U1 snRNP protein involved in splicing OS=Geotrichum candidum GN=BN980_GECA26s00285g PE=4 SV=1
UniRef50_A0A0J9XKX242.05%6168e-140Similar to Saccharomyces cerevisiae YDR235W PRP42 U1 snRNP protein involved in splicing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XKX2_GEOCN
A0A060TDC9_BLAAD34.13%5861e-100ARAD1D46926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D46926g PE=4 SV=1
A0A1E3PQ78_9ASCO34.58%6167e-97Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82023 PE=4 SV=1
A0A1E4TH24_9ASCO33.11%5983e-90Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2727 PE=4 SV=1
Q6C8X1_YARLI25.87%5458e-48YALI0D16225p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D16225g PE=4 SV=1
A0A167D4T7_9ASCO43.15%1973e-43Prp42p OS=Sugiyamaella lignohabitans GN=PRP42 PE=4 SV=1
Q5A014_CANAL31.75%1896e-22mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PRP42 PE=4 SV=1
PRP42_YEAST24.15%3523e-19U1 small nuclear ribonucleoprotein component PRP42 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP42 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.2963

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Repeat
1 100 200 300 400 500 637

Detailed signature matches

  1. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
    2. SSF48452 (TPR-like)
  2. Repeat IPR003107
    HAT (Half-A-TPR) repeat
    1. SM00386 (hat_new_1)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MIA_02381_1
MTPIAENSTRNLQSEESLNSNGGSKSESQTDELLNPAFKEWSQIYSFVEYTPDSFSAWEDLIEITETLEGGLSKASSSSA
VKLFRFTFDTFLNRFPLAQGYWIKYAELEFKLGNTEQAQMIYDKAVNVIPLSVDLWTHYCAFKTIVTPSIKQTRALFEKA
ANCVGYHYLSHLFWDEYIKFEKSNADNLRLFKLYLRVVQLPLHQYAKYFHKLFQLAPNLPVKHLVSAEYLEQFNAEYEME
QLEKEEEEREKKLEQQPEANPNLSQESKAIVTKRQFEEKKKVIEADLRHRIYNYYSRLYIQTQKKVNERFQYESEIQRQF
FHVIYLPEEEIQNWRRYLQFMETENSGNSRLINNESLNELIALYERSIIPFGHYEEFWLRYTKFLVANNKLDEARNVYRR
ASFVLPIGRIQVRLQFALFEESCGDTSMAKSIYLSLLEALPTSTELIVGYANLLHRSECAENAIAYLEQKLEDFKLNSIQ
SNGQSKTNVEKDEEDDSKPSESSSSINGDISALVTAIANAYLEWLGSISKARQIFQQFSHELSSSHYFWREYLRFEIDIA
EDVDIEGDTSENAIEGSQQTEETSLVKQVYDQIKSAELEPNQRKDLAHIYMVFLLSQENVSSKATQKYFEIDKEVYL

GO term prediction

Biological Process

GO:0006396 RNA processing

Molecular Function

GO:0005515 protein binding

Cellular Component

None predicted.