Protein
MCA_01632_1
Length
661 amino acids
Browser: contigA:5025633-5027619+
RNA-seq: read pairs 876, FPKM 16.4, percentile rank 36.0% (100% = highest expression)
Protein function
| KEGG: | K13217 | PRPF39 | pre-mRNA-processing factor 39 |
|---|---|---|---|
| EGGNOG: | 0PIX7 | FG01244.1 | Pre-mRNA-processing factor 39 |
| SGD closest match: | S000004509 | PRP39 | Pre-mRNA-processing factor 39 |
| CGD closest match: | CAL0000176091 | PRP42 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02381_1 | 43.87% | 661 | 3e-157 | MIA_02381_1 |
| A0A0J9XKX2_GEOCN | 39.14% | 442 | 4e-94 | Similar to Saccharomyces cerevisiae YDR235W PRP42 U1 snRNP protein involved in splicing OS=Geotrichum candidum GN=BN980_GECA26s00285g PE=4 SV=1 |
| UniRef50_A0A0J9XKX2 | 39.14% | 442 | 8e-91 | Similar to Saccharomyces cerevisiae YDR235W PRP42 U1 snRNP protein involved in splicing n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XKX2_GEOCN |
| A0A1E3PQ78_9ASCO | 36.72% | 403 | 4e-80 | Uncharacterized protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_82023 PE=4 SV=1 |
| A0A060TDC9_BLAAD | 36.28% | 441 | 5e-79 | ARAD1D46926p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1D46926g PE=4 SV=1 |
| A0A1E4TH24_9ASCO | 36.34% | 388 | 7e-76 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2727 PE=4 SV=1 |
| Q6C096_YARLI | 35.83% | 427 | 2e-74 | YALI0F26631p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_F26631g PE=4 SV=1 |
| A0A167FH39_9ASCO | 28.96% | 404 | 4e-39 | Prp39p OS=Sugiyamaella lignohabitans GN=PRP39 PE=4 SV=1 |
| Q5A014_CANAL | 33.49% | 209 | 3e-22 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PRP42 PE=4 SV=1 |
| PRP39_YEAST | 35.71% | 126 | 4e-21 | Pre-mRNA-processing factor 39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP39 PE=1 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0504
Protein family membership
None predicted.
Domains and repeats
-
Domain
-
Repeat
1
100
200
300
400
500
600
661
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Protein sequence
>MCA_01632_1 MTEVLSKVNHTNNNINLKSDEDDDSLNPAFKEWSNIYSAIEFDPDSFNLWEDLLEEVENLEGGLCKASSTNAIKLFRFTY DSFLERFPLVYGYWIKYANLEFNLGNTEIAVQIYERAVGIIPLSVELWTSFVTFKVTVCPSLRDIRNLFKRAAKIVGHHY LSHTFWDKYIELETQRGDDLTLYNLYITIIQIPLHQYSRYFASLLKLLPQIPVDKLTSPEYLTKFKQQYIAYKESLKANK PEIKDEKIKEKKEGEEDDDEKEKSEEEYIRSCVFKQFVAIFHSTHKRSIARWPYESEIQRPYFHVLYLPEEECVNWRRYL QFIEIECSNDDSNNNNSSSLTYSSRFQDVITLYERAIIPFGHYEEFWLRYTRWLIAHKMISDARNVYRRACYILPIGRIQ VRLQYALFEESLGNFEFVKDSYLAMLQSLPSSTEIILAYVNFLHRTEGASQALSYLESKINEYRNVQEKLKQSEQQQQEK PSSTSIDQSKSTNNNNNVTNKDESSPLLSPGFDADLPALVVALAENYFNWTGNLSKTRSIYSSYTKLFEPSHYFWKNYLN FEINISLKKSIINIFQDSTILSQAPENENEEEHKENVGETFSPNYHQVNNVYTQIKASTLLSQLEKKDLSHIYMVYLLSS DGQSGKQSTLEYFQIDREIHK
GO term prediction
Biological Process
GO:0006396 RNA processing
Molecular Function
GO:0005515 protein binding
Cellular Component
None predicted.