Protein
MIA_02338_1
Length
88 amino acids
Browser: contig03:510879-511286-
Protein function
| EGGNOG: | 0PS3G | FG01381.1 | Small nuclear ribonucleoprotein |
|---|---|---|---|
| SGD closest match: | S000006386 | SMX3 | Small nuclear ribonucleoprotein F |
| CGD closest match: | CAL0000180578 | orf19.4340.1 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_04165_1 | 81.013% | 79 | 7.66e-45 | MCA_04165_1 |
| A0A1E3PKM3_9ASCO | 70.455% | 88 | 4.91e-44 | Putative small nuclear ribonucleo protein f OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_57908 PE=3 SV=1 |
| A0A0J9XBZ6_GEOCN | 72.941% | 85 | 2.00e-42 | Similar to Saccharomyces cerevisiae YPR182W SMX3 Core Sm protein Sm F OS=Geotrichum candidum GN=BN980_GECA08s03530g PE=3 SV=1 |
| Q6CHS5_YARLI | 68.354% | 79 | 1.12e-39 | YALI0A05423p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A05423g PE=3 SV=1 |
| A0A1E4TLD1_9ASCO | 65.432% | 81 | 7.49e-39 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_22444 PE=3 SV=1 |
| UniRef50_O59734 | 67.949% | 78 | 9.53e-31 | Small nuclear ribonucleoprotein F n=20 Tax=Eukaryota TaxID=2759 RepID=RUXF_SCHPO |
| A0A1D8PNM3_CANAL | 54.878% | 82 | 5.79e-29 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4340.1 PE=4 SV=1 |
| RUXF_YEAST | 57.534% | 73 | 1.03e-27 | Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMX3 PE=1 SV=1 |
| A0A060T0X3_BLAAD | 36.364% | 66 | 1.02e-08 | Uncharacterized protein OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C16111g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.3123
Protein family membership
- Sm-like protein Lsm6/SmF (IPR016487)
- Small nuclear ribonucleoprotein F (IPR034100)
Domains and repeats
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Domain
1
10
20
30
40
50
60
70
80
88
Detailed signature matches
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PIRSF006609 (snRNP_SmF)
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-
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cd01722 (Sm_F)
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-
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SSF50182 (Sm-like r...)
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no IPR
Unintegrated signatures
Residue annotation
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heptamer interface...
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Sm1 motif cd01722
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RNA binding site c...
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Sm2 motif cd01722
Protein sequence
>MIA_02338_1 MGGTFDPINPKPFLQGLTGRGVIVRLKWGETEYHGRLVSVDSYMNLQLDSAVEYIDGDKKGQLGEIMIRCNNVLWVAEDS ASGDIDMN
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
GO:0000398 mRNA splicing, via spliceosome
Molecular Function
None predicted.
Cellular Component
GO:0005681 spliceosomal complex
GO:0005732 small nucleolar ribonucleoprotein complex