Protein
MCA_04165_1
Length
107 amino acids
Browser: contigC:2245902-2246359+
RNA-seq: read pairs 970, FPKM 111.0, percentile rank 80.5% (100% = highest expression)
Protein function
| KEGG: | K11098 | SNRPF | small nuclear ribonucleoprotein F |
|---|---|---|---|
| EGGNOG: | 0PS3G | FG01381.1 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000006386 | SMX3 | Small nuclear ribonucleoprotein F |
| CGD closest match: | CAL0000180578 | orf19.4340.1 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MIA_02338_1 | 81.01% | 79 | 2e-43 | MIA_02338_1 |
| Q6CHS5_YARLI | 60.55% | 109 | 6e-43 | YALI0A05423p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A05423g PE=3 SV=1 |
| A0A1E3PKM3_9ASCO | 70.93% | 86 | 9e-43 | Putative small nuclear ribonucleo protein f OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_57908 PE=3 SV=1 |
| A0A0J9XBZ6_GEOCN | 73.49% | 83 | 1e-41 | Similar to Saccharomyces cerevisiae YPR182W SMX3 Core Sm protein Sm F OS=Geotrichum candidum GN=BN980_GECA08s03530g PE=3 SV=1 |
| UniRef50_Q6BPY4 | 60.19% | 103 | 1e-33 | DEHA2E09878p n=2 Tax=Saccharomycetales TaxID=4892 RepID=Q6BPY4_DEBHA |
| A0A1E4TLD1_9ASCO | 59.49% | 79 | 5e-34 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_22444 PE=3 SV=1 |
| A0A1D8PNM3_CANAL | 58.14% | 86 | 2e-31 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.4340.1 PE=4 SV=1 |
| RUXF_YEAST | 53.95% | 76 | 7e-27 | Small nuclear ribonucleoprotein F OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMX3 PE=1 SV=1 |
| A0A060T0X3_BLAAD | 37.31% | 67 | 6e-11 | Uncharacterized protein OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C16111g PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.2292
Predicted cleavage: 22
Protein family membership
- Small nuclear ribonucleoprotein F (IPR034100)
Domains and repeats
-
Domain
1
10
20
30
40
50
60
70
80
90
100
107
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Residue annotation
-
heptamer interface...
-
Sm1 motif cd01722
-
RNA binding site c...
-
Sm2 motif cd01722
Protein sequence
>MCA_04165_1 MSTGFQPINPKPFLQDLTGRQVVVRLKWGETEYKGRLVSVDSYMNLQLDNTTEYIDGENKGLLGEIMIRCNNVLWVGEDK EQTAKTTQGASEESETKVKAEDDVEMS
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
Molecular Function
None predicted.
Cellular Component
GO:0005681 spliceosomal complex