Protein
MIA_02266_1
Length
189 amino acids
Browser: contig03:315839-316620+
Protein function
| EGGNOG: | 0PPAD | FG01082.1 | Small nuclear ribonucleoprotein |
|---|---|---|---|
| SGD closest match: | S000000831 | SMB1 | Small nuclear ribonucleoprotein-associated protein B |
| CGD closest match: | CAL0000198927 | CAALFM_CR07510WA | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| A0A0J9XDI1_GEOCN | 62.264% | 106 | 7.56e-39 | Similar to Saccharomyces cerevisiae YER029C SMB1 Core Sm protein Sm B OS=Geotrichum candidum GN=BN980_GECA10s03244g PE=4 SV=1 |
| MCA_01903_1 | 67.010% | 97 | 2.85e-32 | MCA_01903_1 |
| Q6C948_YARLI | 66.000% | 100 | 1.81e-32 | YALI0D14102p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D14102g PE=4 SV=1 |
| A0A1E3PR15_9ASCO | 53.982% | 113 | 1.86e-30 | LSM-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_40538 PE=4 SV=1 |
| UniRef50_A0A1E3PR15 | 53.982% | 113 | 5.06e-27 | LSM-domain-containing protein n=1 Tax=Nadsonia fulvescens var. elongata DSM 6958 TaxID=857566 RepID=A0A1E3PR15_9ASCO |
| A0A060T4N2_BLAAD | 59.184% | 98 | 2.43e-31 | ARAD1B00858p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B00858g PE=4 SV=1 |
| A0A1D8PTI0_CANAL | 44.231% | 104 | 2.54e-19 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR07510WA PE=4 SV=1 |
| RSMB_YEAST | 43.158% | 95 | 8.43e-14 | Small nuclear ribonucleoprotein-associated protein B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMB1 PE=1 SV=1 |
| A0A161HHX5_9ASCO | 51.471% | 68 | 1.25e-10 | Sm snRNP core protein Smb1 OS=Sugiyamaella lignohabitans GN=smb1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0375
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
160
189
Detailed signature matches
-
-
SSF50182 (Sm-like r...)
-
no IPR
Unintegrated signatures
-
-
cd01717 (Sm_B)
-
mobidb-lite (disord...)
Residue annotation
-
heptamer interface...
-
Sm1 motif cd01717
-
putative hexamer i...
-
RNA binding site c...
-
Sm2 motif cd01717
Protein sequence
>MIA_02266_1 MTNLPRKAKMADLVNYRLRVVLLDGRQLTGQLLAFDKFMNLVLADTEEFRATKKSLAAAKKATSSSASSSESTHSVREIK RTLGLVILRGETIISVSVEAPPPNTDNAARLGASAAATAAAAGGNTSRTGTSRPINRSADGAGFGAPSTATALSGPARTT AASFFGGSSGPSGFGAPPGFQPPPGFGGR
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.