Protein
MCA_01903_1
Length
170 amino acids
Browser: contigA:5832785-5833546-
RNA-seq: read pairs 1313, FPKM 94.9, percentile rank 77.7% (100% = highest expression)
Protein function
| KEGG: | K11086 | SNRPB | small nuclear ribonucleoprotein B and B' |
|---|---|---|---|
| EGGNOG: | 0PPAD | FG01082.1 | Small nuclear ribonucleoprotein |
| SGD closest match: | S000000831 | SMB1 | Small nuclear ribonucleoprotein-associated protein B |
| CGD closest match: | CAL0000198927 | CAALFM_CR07510WA | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| Q6C948_YARLI | 54.33% | 127 | 5e-36 | YALI0D14102p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_D14102g PE=4 SV=1 |
| A0A0J9XDI1_GEOCN | 58.33% | 96 | 7e-32 | Similar to Saccharomyces cerevisiae YER029C SMB1 Core Sm protein Sm B OS=Geotrichum candidum GN=BN980_GECA10s03244g PE=4 SV=1 |
| A0A060T4N2_BLAAD | 54.90% | 102 | 4e-31 | ARAD1B00858p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1B00858g PE=4 SV=1 |
| MIA_02266_1 | 67.01% | 97 | 3e-30 | MIA_02266_1 |
| UniRef50_A0A1E4TPL8 | 52.34% | 107 | 1e-26 | Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TPL8_PACTA |
| A0A1E3PR15_9ASCO | 42.86% | 140 | 1e-26 | LSM-domain-containing protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_40538 PE=4 SV=1 |
| A0A1D8PTI0_CANAL | 38.61% | 101 | 5e-19 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CAALFM_CR07510WA PE=4 SV=1 |
| RSMB_YEAST | 45.65% | 92 | 9e-15 | Small nuclear ribonucleoprotein-associated protein B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMB1 PE=1 SV=1 |
| A0A161HHX5_9ASCO | 49.32% | 73 | 2e-14 | Sm snRNP core protein Smb1 OS=Sugiyamaella lignohabitans GN=smb1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0147
Protein family membership
None predicted.
Domains and repeats
-
Domain
1
20
40
60
80
100
120
140
160
170
Detailed signature matches
-
-
SSF50182 (Sm-like r...)
-
no IPR
Unintegrated signatures
-
-
cd01717 (Sm_B)
-
mobidb-lite (disord...)
Residue annotation
-
heptamer interface...
-
Sm1 motif cd01717
-
putative hexamer i...
-
RNA binding site c...
-
Sm2 motif cd01717
Protein sequence
>MCA_01903_1 MVVADLVHYRLRVVLLDGRQLIGELLAFDKYMNIVLADTEEFRATRKSLVAAKKAASSGDSSTNIPPIRETKRALGLIIL RGETIISVSVEAPPRTVDPAARLGGIVSSSDPSNAGVVAQGQGFAKPINRAPSATLAAPARTSAASFFGGGSAGSGVPPG FQPPPGFGGR
GO term prediction
Biological Process
None predicted.
Molecular Function
None predicted.
Cellular Component
None predicted.