Protein

MIA_02180_1

Length
931 amino acids

Browser: contig03:62163-64959+

Protein function

EGGNOG:0PJ5IPGUG_05007factor (Prp1
SGD closest match:S000000259PRP6Pre-mRNA-splicing factor 6
CGD closest match:CAL0000180134orf19.6356U4/U6-U5 snRNP complex subunit

Protein alignments

%idAln lengthE-value
MCA_06457_157.73%9320.0MCA_06457_1
A0A0J9X652_GEOCN56.66%9390.0Similar to Saccharomyces cerevisiae YBR055C PRP6 Splicing factor OS=Geotrichum candidum GN=BN980_GECA03s04201g PE=4 SV=1
A0A060T569_BLAAD48.60%9300.0ARAD1C09614p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C09614g PE=4 SV=1
UniRef50_A0A060T56948.60%9300.0ARAD1C09614p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T569_BLAAD
A0A167EFA3_9ASCO47.69%9940.0Prp6p OS=Sugiyamaella lignohabitans GN=PRP6 PE=4 SV=1
A0A1E3PF76_9ASCO47.06%9350.0Putative mRNA splicing factor OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52945 PE=4 SV=1
Q6CBE9_YARLI39.81%9270.0YALI0C19426p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C19426g PE=4 SV=1
A0A1E4TFW3_9ASCO31.94%9331e-133Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2323 PE=4 SV=1
A0A1D8PFI2_CANAL31.76%9542e-109U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6356 PE=4 SV=1
PRP6_YEAST26.89%9415e-90Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP6 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0238

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
  4. Repeat
1 100 200 300 400 500 600 700 800 931

Detailed signature matches

  1. Domain IPR010491
    PRP1 splicing factor, N-terminal
    1. PF06424 (PRP1_N)
  2. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
    2. SSF48452 (TPR-like)
  3. Domain IPR013026
    Tetratricopeptide repeat-containing domain
    1. PS50293 (TPR_REGION)
  4. Repeat IPR003107
    HAT (Half-A-TPR) repeat
    1. SM00386 (hat_new_1)
  5. Repeat IPR019734
    Tetratricopeptide repeat
    1. PS50005 (TPR)
    2. SM00028 (tpr_5)
    3. PF13181 (TPR_8)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. mobidb-lite (disord...)

Protein sequence

>MIA_02180_1
MAEYKSFLDMPAPEGYVPGLGRGATGFTTRSDIGPARSGFAEDALKSSAKQDGENEGENEERFQDPENDTGLFSSAVKFE
PEDEEADSIYLSVDQRMNERHINQKEVREKAEQDALKKEAAKASERFSDLKRALSTVTEDQWENLPEVGDLTRKYKRQRK
LQQQQTRFYNVPDSLLTNAINHGDVESSIDPVNSLEVDGAMTDFRSISSARDKMLGMKLDQASTESVPSLPTKNNENGFN
TVDPKGYLTSLAGKSLHNTGNFGDIKRSRALLKSLVISNPRDPSGWIGLARIEELSNRMQKALSVIEEGCRNNPKSEDVW
IENIRLNENNNLENSKRIAARAVQQLPKSINLWMKSYMLEKNLNSQKKVIRMALENIPNSDTLWKTAVQLESEPSDAKLL
LKEAVNRVPLSEDLWLALARLETPDNARKVLNNARKHLKASKAVWIAAGILEERDSNNKEKVNKIIERGVRKLESEGFLP
DKAQWISEAELCEREHAPLTCHAIINATIGIGFENENKERLLIDQGRLCAQRKSYETASAIYEYTICQFSKSKGPWMALC
QLKKTHGDLESLFSTLEKAVDALPNSEEFWLMYANEKRLSGDIIGAKSVLQRAFEKNPDNEDIWLSAVGIEAENQEFDKA
RMLLDRARTEAGTERVWFKSVFLERQLKNNVDACRLVDEGLKKYPFSDKLWMQKGQIYEALKDNRKALNSYRNGLKSCPK
SVPLWILLAKLEERLGESIKARSVLEKASLNNHKNEQIWYARITLEKRTGNATQMKVLLARALQELPTSGLLWSEAILNE
QLIHRRSKIREASLACQNDPFLLITVAREFWRMEKYDKAKVWFEQSIQRDPDNGDAWMWYYKFLQSQLLSGSSSGKSTQE
IDKNIEKFLNDFKSTEPKHGQMWPSFSKDPNNFGKSRVDVLKLSMSSLDLI

GO term prediction

Biological Process

GO:0000398 mRNA splicing, via spliceosome
GO:0006396 RNA processing

Molecular Function

GO:0005515 protein binding

Cellular Component

GO:0005634 nucleus