Protein

MCA_06457_1

Length
931 amino acids

Browser: contigD:4301837-4304633+

RNA-seq: read pairs 997, FPKM 13.2, percentile rank 31.2% (100% = highest expression)

Protein function

KEGG:K12855PRPF6 pre-mRNA-processing factor 6
EGGNOG:0PJ5IPGUG_05007factor (Prp1
SGD closest match:S000000259PRP6Pre-mRNA-splicing factor 6
CGD closest match:CAL0000180134orf19.6356U4/U6-U5 snRNP complex subunit

Protein alignments

%idAln lengthE-value
A0A0J9X652_GEOCN59.25%9350.0Similar to Saccharomyces cerevisiae YBR055C PRP6 Splicing factor OS=Geotrichum candidum GN=BN980_GECA03s04201g PE=4 SV=1
MIA_02180_157.73%9320.0MIA_02180_1
A0A060T569_BLAAD50.70%9250.0ARAD1C09614p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C09614g PE=4 SV=1
UniRef50_A0A060T56950.70%9250.0ARAD1C09614p n=1 Tax=Blastobotrys adeninivorans TaxID=409370 RepID=A0A060T569_BLAAD
A0A167EFA3_9ASCO48.19%9920.0Prp6p OS=Sugiyamaella lignohabitans GN=PRP6 PE=4 SV=1
A0A1E3PF76_9ASCO47.13%9230.0Putative mRNA splicing factor OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_52945 PE=4 SV=1
Q6CBE9_YARLI40.11%9350.0YALI0C19426p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_C19426g PE=4 SV=1
A0A1E4TFW3_9ASCO33.93%8991e-147Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_2323 PE=4 SV=1
A0A1D8PFI2_CANAL33.11%8852e-117U4/U6-U5 snRNP complex subunit OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=orf19.6356 PE=4 SV=1
PRP6_YEAST28.11%9323e-105Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP6 PE=1 SV=1

Mitochondrial localization by mitoprotII

Probability of mitochondrial location: 0.0079

Protein family membership

None predicted.

Domains and repeats

  1. Domain
  2. Domain
  3. Repeat
  4. Repeat
1 100 200 300 400 500 600 700 800 931

Detailed signature matches

  1. Domain IPR010491
    PRP1 splicing factor, N-terminal
    1. PF06424 (PRP1_N)
  2. Domain IPR011990
    Tetratricopeptide-like helical domain
    1. G3DSA:1.25.40.10
    2. SSF48452 (TPR-like)
  3. Domain IPR013026
    Tetratricopeptide repeat-containing domain
    1. PS50293 (TPR_REGION)
  4. Repeat IPR003107
    HAT (Half-A-TPR) repeat
    1. SM00386 (hat_new_1)
  5. Repeat IPR019734
    Tetratricopeptide repeat
    1. SM00028 (tpr_5)
    2. PF13181 (TPR_8)
Unintegrated signatures no IPR
Unintegrated signatures
  1. Coil
  2. PF14559 (TPR_19)
  3. mobidb-lite (disord...)

Protein sequence

>MCA_06457_1
MSERKSFLDMTPPEGYIPGLGRGATGFTTRSDIGPARAGIAGDFLNKKEDDAQQNDNEEENDERFQDPENEEGLFASSNQ
LDAEDEEAERIYNEIDRRMEERHKKKPQKTADKDADESKNSDNIAEKFVDLKRALGSVTEDQWANLPDVGDLTRKYKRQR
KLQQQQQRFYAVPDMVLESSQNQSKIETSIKANDDLTQADGTMTDFRSISSARDKMLGMKLDQASSGIATTVGSEDSSGG
FTNVDPKGYLTSLTGSFIPGATDIGDVRRIRPLLKSLVATDPKEPRGWIGLARLEELASHQKRAIAVIEEGCQFNPYVED
VWLEYIRLTRAYKPEDSKKVASKAVQQLPTSIKLWQEAANLETDTASKRKVIQMALENNPKSDTLWREAVNLENDPSNAK
LLLAQAVELVPLSEDLWLALARLETPSNARKVLNKARKMLKVSRAVWIAAARLEEQTGGTFEKVEKRIQRGVKELEEEGG
LPERSLWISDAEECEREGSILTCKAIIIHTIGQGIEEENRKSVWLEDGKLATNRGSYETARAIYWHAIKYYPESKSLWFS
IAQLEKEHGKIESLFEVLEKAVSTHSNTETFWLMYAREKVNSGDPQGARDILKRAFEKNPNNEDIWLAAITMEAEDKNYD
EARILLRKARVEADTESIWVKSVELERQLNNLDTALTLATQGLEKYPQSSELWVQKGQIYQSMDNIQLAISTYKLGTRAT
PKFVPLWLSLSELEEKMGNKVKARSTLETAALTNEKNEKLWVERVRLEKRMGNETQAKVLLSRALQELPKSGLLWSELIL
LEQPMQRRTKIREAVAACENDPALLVTIAREFWRTGKQDKAKVWFERSIQQNSDYGDAWLWYYKFLVYIKSSGNGDPDIA
EKNLELCLKGFLNADPRHGDEWPKQRNKPSNFGKNIVQVFKEASESLANVK

GO term prediction

Biological Process

GO:0000398 mRNA splicing, via spliceosome
GO:0006396 RNA processing

Molecular Function

GO:0005515 protein binding

Cellular Component

GO:0005634 nucleus