Protein
MIA_02056_1
Length
112 amino acids
Browser: contig02:2481003-2481523-
Protein function
| EGGNOG: | 0PP13 | FG05965.1 | Small nuclear ribonucleoprotein |
|---|---|---|---|
| SGD closest match: | S000004137 | SMD3 | Small nuclear ribonucleoprotein Sm D3 |
| CGD closest match: | CAL0000184508 | SMD3 | mRNA splicing protein |
Protein alignments
| %id | Aln length | E-value | ||
|---|---|---|---|---|
| MCA_03684_1 | 93.814% | 97 | 3.62e-64 | MCA_03684_1 |
| A0A0J9XIN3_GEOCN | 82.653% | 98 | 7.70e-60 | Similar to Saccharomyces cerevisiae YLR147C SMD3 Core Sm protein Sm D3 OS=Geotrichum candidum GN=BN980_GECA19s01594g PE=4 SV=1 |
| A0A060T2D4_BLAAD | 79.570% | 93 | 2.62e-54 | ARAD1C30668p OS=Blastobotrys adeninivorans GN=GNLVRS02_ARAD1C30668g PE=4 SV=1 |
| UniRef50_C9SNY3 | 74.510% | 102 | 5.71e-49 | Small nuclear ribonucleoprotein Sm D3 n=22 Tax=Dikarya TaxID=451864 RepID=C9SNY3_VERA1 |
| A0A1E3PNQ5_9ASCO | 81.818% | 88 | 3.17e-52 | Sm-like ribonucleo protein OS=Nadsonia fulvescens var. elongata DSM 6958 GN=NADFUDRAFT_40243 PE=4 SV=1 |
| Q6CGI5_YARLI | 79.348% | 92 | 8.00e-52 | YALI0A19030p OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_A19030g PE=4 SV=1 |
| A0A1E4TIZ1_9ASCO | 58.763% | 97 | 4.60e-39 | Uncharacterized protein OS=Tortispora caseinolytica NRRL Y-17796 GN=CANCADRAFT_308 PE=4 SV=1 |
| SMD3_YEAST | 62.963% | 81 | 4.29e-37 | Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1 |
| Q59NQ6_CANAL | 59.036% | 83 | 6.71e-34 | mRNA splicing protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SMD3 PE=4 SV=1 |
| A0A167CK75_9ASCO | 33.846% | 65 | 6.77e-08 | Smd1p OS=Sugiyamaella lignohabitans GN=SMD1 PE=4 SV=1 |
Mitochondrial localization by mitoprotII
Probability of mitochondrial location: 0.0120
Protein family membership
- Small nuclear ribonucleoprotein Sm D3 (IPR034099)
Domains and repeats
-
Domain
1
20
40
60
80
100
112
Detailed signature matches
no IPR
Unintegrated signatures
-
-
mobidb-lite (disord...)
Residue annotation
-
Sm1 motif cd01721
-
putative hexamer i...
-
heptamer interface...
-
RNA binding site c...
-
Sm2 motif cd01721
Protein sequence
>MIA_02056_1 MGSIGIPIKLLNEAQGHSVTLELTSGETYRGKLLEAEDNMNVQLRDVTVTARDGRVSHLEQVYVRGSHVRMFIVPDMLRL APMFRPKTLAKVRGAAQPSRGRGGMRRRPGPR
GO term prediction
Biological Process
GO:0000387 spliceosomal snRNP assembly
Molecular Function
None predicted.
Cellular Component
GO:0005681 spliceosomal complex